Results 41 - 60 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 3' | -58.7 | NC_004812.1 | + | 133301 | 0.73 | 0.391005 |
Target: 5'- ---cCUcgCCCUCCccUCCCCCgcgcaCCCCUCg -3' miRNA: 3'- gaaaGAa-GGGAGG--AGGGGGa----GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132482 | 0.66 | 0.79095 |
Target: 5'- ---cCUUCCC-CCaCCCCCgCCCCcaUCg -3' miRNA: 3'- gaaaGAAGGGaGGaGGGGGaGGGG--AG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132437 | 0.72 | 0.460609 |
Target: 5'- -gUUCUUCUCcCCUCCCCCcacaaCCCCg- -3' miRNA: 3'- gaAAGAAGGGaGGAGGGGGa----GGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132367 | 0.69 | 0.625798 |
Target: 5'- -------gCCUCCUUCCCCUUCCCg- -3' miRNA: 3'- gaaagaagGGAGGAGGGGGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132300 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132274 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132248 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132222 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132196 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132170 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132144 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132118 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132092 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132066 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132040 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 132014 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 131988 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 131962 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 131936 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 131910 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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