Results 1 - 20 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 3' | -58.7 | NC_004812.1 | + | 7199 | 1.1 | 0.001419 |
Target: 5'- cCUUUCUUCCCUCCUCCCCCUCCCCUCg -3' miRNA: 3'- -GAAAGAAGGGAGGAGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 38100 | 1.1 | 0.001419 |
Target: 5'- cCUUUCUUCCCUCCUCCCCCUCCCCUCg -3' miRNA: 3'- -GAAAGAAGGGAGGAGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 29629 | 0.92 | 0.02481 |
Target: 5'- -cUUCUcUCCCUCCUCCCCCUCCCCa- -3' miRNA: 3'- gaAAGA-AGGGAGGAGGGGGAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 24995 | 0.91 | 0.029172 |
Target: 5'- uCUUUCUUUCCUuucucuccCCUCCCCCUCCCCUCc -3' miRNA: 3'- -GAAAGAAGGGA--------GGAGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 150504 | 0.91 | 0.029172 |
Target: 5'- uCUUUCUUUCCUuucucuccCCUCCCCCUCCCCUCc -3' miRNA: 3'- -GAAAGAAGGGA--------GGAGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 101886 | 0.83 | 0.101594 |
Target: 5'- ---cCggCCC-CCUCCCCCUCCCCUCc -3' miRNA: 3'- gaaaGaaGGGaGGAGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 131729 | 0.82 | 0.121687 |
Target: 5'- ---cCUUCCCUCC-CCCCUUCCCUUCc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 115872 | 0.8 | 0.160814 |
Target: 5'- ---cCUcCCCUCCcccgcgCCCCCUCCCCUCc -3' miRNA: 3'- gaaaGAaGGGAGGa-----GGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 116010 | 0.8 | 0.160814 |
Target: 5'- ---cCUcCCCUCCcccgcgCCCCCUCCCCUCc -3' miRNA: 3'- gaaaGAaGGGAGGa-----GGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 116068 | 0.8 | 0.160814 |
Target: 5'- ---cCUcCCCUCCcccgcgCCCCCUCCCCUCc -3' miRNA: 3'- gaaaGAaGGGAGGa-----GGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 97609 | 0.79 | 0.16905 |
Target: 5'- ---cCUUCCCcCUUCCCCCUCCCC-Cg -3' miRNA: 3'- gaaaGAAGGGaGGAGGGGGAGGGGaG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 425 | 0.79 | 0.191309 |
Target: 5'- ------cCCCUCC-CCCCCUCCCCUUc -3' miRNA: 3'- gaaagaaGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 1835 | 0.79 | 0.191309 |
Target: 5'- --cUCccCCCUCCUCCCCuCUCCCCg- -3' miRNA: 3'- gaaAGaaGGGAGGAGGGG-GAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 125933 | 0.79 | 0.191309 |
Target: 5'- ------cCCCUCC-CCCCCUCCCCUUc -3' miRNA: 3'- gaaagaaGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 127343 | 0.79 | 0.191309 |
Target: 5'- --cUCccCCCUCCUCCCCuCUCCCCg- -3' miRNA: 3'- gaaAGaaGGGAGGAGGGG-GAGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 153496 | 0.78 | 0.196058 |
Target: 5'- ------aCCCUCCccaccacucccUCCCCCUCCCCUCc -3' miRNA: 3'- gaaagaaGGGAGG-----------AGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 122595 | 0.78 | 0.196058 |
Target: 5'- ------aCCCUCCccaccacucccUCCCCCUCCCCUCc -3' miRNA: 3'- gaaagaaGGGAGG-----------AGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 131832 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 131806 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 131780 | 0.78 | 0.210929 |
Target: 5'- ---cCUUCCCUUC-CCCCCUUCCCUUc -3' miRNA: 3'- gaaaGAAGGGAGGaGGGGGAGGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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