Results 21 - 40 of 218 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 3' | -58.7 | NC_004812.1 | + | 131266 | 0.67 | 0.744628 |
Target: 5'- -------gCCUCCggCCCCUCUCCUCu -3' miRNA: 3'- gaaagaagGGAGGagGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 69810 | 0.67 | 0.744628 |
Target: 5'- --gUCgccgccgCCCUCCUCCUCUcCCCC-Cg -3' miRNA: 3'- gaaAGaa-----GGGAGGAGGGGGaGGGGaG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 154556 | 0.67 | 0.744628 |
Target: 5'- ---gCgcgCCC-CCUCCCCCgcgCCCCcCg -3' miRNA: 3'- gaaaGaa-GGGaGGAGGGGGa--GGGGaG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 29047 | 0.67 | 0.744628 |
Target: 5'- ---gCgcgCCC-CCUCCCCCgcgCCCCcCg -3' miRNA: 3'- gaaaGaa-GGGaGGAGGGGGa--GGGGaG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 5758 | 0.67 | 0.744628 |
Target: 5'- -------gCCUCCggCCCCUCUCCUCu -3' miRNA: 3'- gaaagaagGGAGGagGGGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 40371 | 0.67 | 0.735043 |
Target: 5'- uUUUCUguUCCCcCCcCCCCCcCCCCc- -3' miRNA: 3'- gAAAGA--AGGGaGGaGGGGGaGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 29656 | 0.67 | 0.735043 |
Target: 5'- ---cCUUCUCUCCcCCgCCCaUCCCCg- -3' miRNA: 3'- gaaaGAAGGGAGGaGG-GGG-AGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 118208 | 0.67 | 0.725372 |
Target: 5'- cCUUUCgcuccggCCCaccgUCCcCCCCCcaucCCCCUCg -3' miRNA: 3'- -GAAAGaa-----GGG----AGGaGGGGGa---GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 40114 | 0.67 | 0.725372 |
Target: 5'- -----gUCCgUCCgcgaCCCCCggCCCCUCc -3' miRNA: 3'- gaaagaAGGgAGGa---GGGGGa-GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 149109 | 0.67 | 0.725372 |
Target: 5'- cCUUUCgcuccggCCCaccgUCCcCCCCCcaucCCCCUCg -3' miRNA: 3'- -GAAAGaa-----GGG----AGGaGGGGGa---GGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 139848 | 0.67 | 0.715623 |
Target: 5'- ------aCCCUCCggCCCCCgcgCCCCcCg -3' miRNA: 3'- gaaagaaGGGAGGa-GGGGGa--GGGGaG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 149672 | 0.67 | 0.715623 |
Target: 5'- --cUUUUCCCcgCUUCCCCCccaCCCCg- -3' miRNA: 3'- gaaAGAAGGGa-GGAGGGGGa--GGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 118770 | 0.67 | 0.715623 |
Target: 5'- --cUUUUCCCcgCUUCCCCCccaCCCCg- -3' miRNA: 3'- gaaAGAAGGGa-GGAGGGGGa--GGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 84466 | 0.67 | 0.715623 |
Target: 5'- ------gCCCgCCUCCCCCggCCCCg- -3' miRNA: 3'- gaaagaaGGGaGGAGGGGGa-GGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 33057 | 0.67 | 0.715623 |
Target: 5'- cCUUUUgacggCCCcgCCUCCgccccgCCCUCUCCUCc -3' miRNA: 3'- -GAAAGaa---GGGa-GGAGG------GGGAGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 126414 | 0.68 | 0.705804 |
Target: 5'- ------aCCCcCCUCCCCCaCgCCCUCg -3' miRNA: 3'- gaaagaaGGGaGGAGGGGGaG-GGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 906 | 0.68 | 0.705804 |
Target: 5'- ------aCCCcCCUCCCCCaCgCCCUCg -3' miRNA: 3'- gaaagaaGGGaGGAGGGGGaG-GGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 78298 | 0.68 | 0.695926 |
Target: 5'- ---cCgggCCCUCCgCCCCCgCCCCg- -3' miRNA: 3'- gaaaGaa-GGGAGGaGGGGGaGGGGag -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 34101 | 0.68 | 0.695926 |
Target: 5'- ---gCUUCUCUCuCUCUCCg-CCCCUCc -3' miRNA: 3'- gaaaGAAGGGAG-GAGGGGgaGGGGAG- -5' |
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21559 | 3' | -58.7 | NC_004812.1 | + | 102986 | 0.68 | 0.695926 |
Target: 5'- ---gCUUCuCCUCgUCCgCCCUCUCCa- -3' miRNA: 3'- gaaaGAAG-GGAGgAGG-GGGAGGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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