miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 30375 0.69 0.596584
Target:  5'- cGGGGGa---GGGGAGGGGcGGGGc-- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCUU-CCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 17923 0.69 0.596584
Target:  5'- cGGGcgcgaggcccGGUcgGGGGGGGaGAGGGGGu-- -3'
miRNA:   3'- aCCC----------CCAaaCCCCCUC-CUUCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 10477 0.69 0.605676
Target:  5'- gUGGGGaccgcGGGGGGGAgucggcucgggguAGGGGAGAg -3'
miRNA:   3'- -ACCCCcaaacCCCCUCCU-------------UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 31141 0.69 0.606687
Target:  5'- cGGGGcccaaGGcucccgcgcGGGAGGAGGGGGggGu -3'
miRNA:   3'- aCCCCcaaa-CC---------CCCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 6693 0.69 0.57646
Target:  5'- aGGGGGcguguguguUggGGGGGAGaGAAGGaGAAAg -3'
miRNA:   3'- aCCCCC---------AaaCCCCCUC-CUUCCcCUUU- -5'
21559 5' -59.1 NC_004812.1 + 34449 0.69 0.556493
Target:  5'- gUGGGauGGUcgUGGGaGGGGGAAGGGa--- -3'
miRNA:   3'- -ACCC--CCAa-ACCC-CCUCCUUCCCcuuu -5'
21559 5' -59.1 NC_004812.1 + 148220 0.69 0.596584
Target:  5'- gGGGGGgccgcUUGGguggccggcGGGGGGAgcAGGGGGc- -3'
miRNA:   3'- aCCCCCa----AACC---------CCCUCCU--UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 155883 0.69 0.596584
Target:  5'- cGGGGGa---GGGGAGGGGcGGGGc-- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCUU-CCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 240 0.69 0.606687
Target:  5'- cGGGGcccaaGGcucccgcgcGGGAGGAGGGGGggGu -3'
miRNA:   3'- aCCCCcaaa-CC---------CCCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 79416 0.69 0.605676
Target:  5'- cGGGGGccgccgcUUUGGGGGgcGGGGuuuGGGGu-- -3'
miRNA:   3'- aCCCCC-------AAACCCCC--UCCUu--CCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 52254 0.7 0.526939
Target:  5'- cGGGcGGcugguuggUUGcGGGGAGGcGGGGGAu- -3'
miRNA:   3'- aCCC-CCa-------AAC-CCCCUCCuUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 72044 0.7 0.546583
Target:  5'- cUGGGGGggcgGGGGGucGGGGGcgcuGGGGGc- -3'
miRNA:   3'- -ACCCCCaaa-CCCCC--UCCUU----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 970 0.7 0.53673
Target:  5'- cGGGGGUccUGGGGGuccggggucgccGGGGuccuGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC------------UCCUu---CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 148822 0.7 0.526939
Target:  5'- cGGGGGa---GGGGAGGGcgAGGGGu-- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCU--UCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 2295 0.7 0.507565
Target:  5'- cGGGGGUcucGGGGGucuccgcggAGGAcGGGGGc- -3'
miRNA:   3'- aCCCCCAaa-CCCCC---------UCCUuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 100114 0.7 0.497992
Target:  5'- cGcGGGc--GGGGGAgGGGAGGGGAGg -3'
miRNA:   3'- aCcCCCaaaCCCCCU-CCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 33196 0.7 0.507565
Target:  5'- cGGGGGUcucGGGGGucuccgcggAGGAcGGGGGc- -3'
miRNA:   3'- aCCCCCAaa-CCCCC---------UCCUuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 16830 0.7 0.507565
Target:  5'- cGcGGGGUcgGGGGGuAGGGGuGGGAGu -3'
miRNA:   3'- aC-CCCCAaaCCCCC-UCCUUcCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 5684 0.7 0.495135
Target:  5'- cGGGGGgccGGGGGucucccagggccacGGGggGGcGGggGu -3'
miRNA:   3'- aCCCCCaaaCCCCC--------------UCCuuCC-CCuuU- -5'
21559 5' -59.1 NC_004812.1 + 49621 0.7 0.526939
Target:  5'- aGGGGcGcccgcGGGGcGGGAGGGGGAGg -3'
miRNA:   3'- aCCCC-Caaa--CCCCcUCCUUCCCCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.