miRNA display CGI


Results 81 - 100 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 33196 0.7 0.507565
Target:  5'- cGGGGGUcucGGGGGucuccgcggAGGAcGGGGGc- -3'
miRNA:   3'- aCCCCCAaa-CCCCC---------UCCUuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 17028 0.7 0.53673
Target:  5'- gGGGGGUgaaGGGGucGGcGGGGGGc- -3'
miRNA:   3'- aCCCCCAaa-CCCCcuCCuUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 13461 0.7 0.526939
Target:  5'- cGGGGGUg-GGGGGuGGcgucgcGGGGAc- -3'
miRNA:   3'- aCCCCCAaaCCCCCuCCuu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 49621 0.7 0.526939
Target:  5'- aGGGGcGcccgcGGGGcGGGAGGGGGAGg -3'
miRNA:   3'- aCCCC-Caaa--CCCCcUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 23314 0.7 0.526939
Target:  5'- cGGGGGa---GGGGAGGGcgAGGGGu-- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCU--UCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 31724 0.71 0.469778
Target:  5'- cGGGGGUccUGGGGGuccGGGGuggccGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 16763 0.71 0.460555
Target:  5'- cGGGGGgcgcGGGGGccGGAGGGuGAGGg -3'
miRNA:   3'- aCCCCCaaa-CCCCCucCUUCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 31766 0.71 0.451428
Target:  5'- cUGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3'
miRNA:   3'- -ACCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 35675 0.71 0.451428
Target:  5'- cGGGcGcggUGGGGGAGGggGcGGGGc- -3'
miRNA:   3'- aCCCcCaa-ACCCCCUCCuuC-CCCUuu -5'
21559 5' -59.1 NC_004812.1 + 118509 0.71 0.4885
Target:  5'- aGGGGa---GGGGGAGGAgggaagaaAGGGGGc- -3'
miRNA:   3'- aCCCCcaaaCCCCCUCCU--------UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 71138 0.71 0.482846
Target:  5'- cGGGGGUUcGGGGGcgcgcgaguucgucgGGGGgcAGGGcGAAGg -3'
miRNA:   3'- aCCCCCAAaCCCCC---------------UCCU--UCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 85973 0.71 0.479094
Target:  5'- uUGGuGGGg--GGGGGAacgcuGGAAaGGGGAGGu -3'
miRNA:   3'- -ACC-CCCaaaCCCCCU-----CCUU-CCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 108937 0.71 0.4885
Target:  5'- cGGGGGUcgUGGGucugucGGGGGcgcGGGGGAu- -3'
miRNA:   3'- aCCCCCAa-ACCC------CCUCCu--UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 4774 0.71 0.451428
Target:  5'- cGGGcGcggUGGGGGAGGggGcGGGGc- -3'
miRNA:   3'- aCCCcCaa-ACCCCCUCCuuC-CCCUuu -5'
21559 5' -59.1 NC_004812.1 + 143947 0.71 0.451428
Target:  5'- gUGGGGGcggGGuGGGAGGAGcGcGGGAu- -3'
miRNA:   3'- -ACCCCCaaaCC-CCCUCCUU-C-CCCUuu -5'
21559 5' -59.1 NC_004812.1 + 865 0.71 0.451428
Target:  5'- cUGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3'
miRNA:   3'- -ACCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 78963 0.71 0.468851
Target:  5'- cGGGGGUcgGGGgugcgccGGGGGucGGGGGu- -3'
miRNA:   3'- aCCCCCAaaCCC-------CCUCCuuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 823 0.71 0.469778
Target:  5'- cGGGGGUccUGGGGGuccGGGGuggccGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 918 0.71 0.469778
Target:  5'- cGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 35546 0.71 0.469778
Target:  5'- cGGGGGgcgcgggcGGGGcccggauaGAGGGAGGGGGc- -3'
miRNA:   3'- aCCCCCaaa-----CCCC--------CUCCUUCCCCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.