miRNA display CGI


Results 101 - 120 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 31819 0.71 0.469778
Target:  5'- cGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 47838 0.71 0.479094
Target:  5'- aGGGcGGUggGGGaGGGGGAgAGGGGc-- -3'
miRNA:   3'- aCCC-CCAaaCCC-CCUCCU-UCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 85973 0.71 0.479094
Target:  5'- uUGGuGGGg--GGGGGAacgcuGGAAaGGGGAGGu -3'
miRNA:   3'- -ACC-CCCaaaCCCCCU-----CCUU-CCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 16763 0.71 0.460555
Target:  5'- cGGGGGgcgcGGGGGccGGAGGGuGAGGg -3'
miRNA:   3'- aCCCCCaaa-CCCCCucCUUCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 11921 0.71 0.479094
Target:  5'- gUGGGGGUggGGcGGcGGGgcGGGGGu- -3'
miRNA:   3'- -ACCCCCAaaCC-CCcUCCuuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 36897 0.72 0.424661
Target:  5'- cGaGGGUcgGGGGGAcGAGGGGGAc- -3'
miRNA:   3'- aCcCCCAaaCCCCCUcCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 35982 0.72 0.436145
Target:  5'- cGGGGGgccgggguccggccGGGGAGGcGGGGGAGu -3'
miRNA:   3'- aCCCCCaaac----------CCCCUCCuUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 72146 0.72 0.415086
Target:  5'- gUGcGGGGcc-GGGGGAGGcgggcuuGGGGGGAGGg -3'
miRNA:   3'- -AC-CCCCaaaCCCCCUCC-------UUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 104178 0.72 0.41336
Target:  5'- cGGGGGgaUGggcggcgaugcGGGGAGGGagcgagagcgagcgGGGGGAAGg -3'
miRNA:   3'- aCCCCCaaAC-----------CCCCUCCU--------------UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 139637 0.72 0.407351
Target:  5'- cGGGGGgc-GGGGccgagaGAGGGgcAGGGGAAGa -3'
miRNA:   3'- aCCCCCaaaCCCC------CUCCU--UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 105416 0.72 0.407351
Target:  5'- gUGGGGGcgcgagGGGGGaAGGAAcgcucggugcgcGGGGAGGg -3'
miRNA:   3'- -ACCCCCaaa---CCCCC-UCCUU------------CCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 79017 0.72 0.398864
Target:  5'- cGGGGG-UUGGGGGucggcuggcugGGGucGGGGGc- -3'
miRNA:   3'- aCCCCCaAACCCCC-----------UCCuuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 71355 0.72 0.398864
Target:  5'- cGGGGGcgUGGguaGGGAGGAAGuGGGc-- -3'
miRNA:   3'- aCCCCCaaACC---CCCUCCUUC-CCCuuu -5'
21559 5' -59.1 NC_004812.1 + 5081 0.72 0.436145
Target:  5'- cGGGGGgccgggguccggccGGGGAGGcGGGGGAGu -3'
miRNA:   3'- aCCCCCaaac----------CCCCUCCuUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 36891 0.72 0.39718
Target:  5'- cGcGGGGUgguaggcgccgGGGGGcgagGGGAAGGGGAc- -3'
miRNA:   3'- aC-CCCCAaa---------CCCCC----UCCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 117602 0.73 0.374093
Target:  5'- -cGGGGUUccGGGccGGGGGAGGGGGGGc -3'
miRNA:   3'- acCCCCAAa-CCC--CCUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 102947 0.73 0.374093
Target:  5'- cGGGGGUggcGGGGGGGcGucGGGGu-- -3'
miRNA:   3'- aCCCCCAaa-CCCCCUC-CuuCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 126965 0.73 0.377335
Target:  5'- cGGGGGagagaagggaugGGGaGGGGGAGGaGGGAGAg -3'
miRNA:   3'- aCCCCCaaa---------CCC-CCUCCUUC-CCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24165 0.73 0.358167
Target:  5'- cGGGGcg--GGGuuguGGGGGGAGGGGAGAa -3'
miRNA:   3'- aCCCCcaaaCCC----CCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 10095 0.73 0.350385
Target:  5'- gUGGGGGUcgcugUGGGGGugagaggugAGGAAGGGaAAAg -3'
miRNA:   3'- -ACCCCCAa----ACCCCC---------UCCUUCCCcUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.