Results 81 - 100 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 38399 | 0.78 | 0.176338 |
Target: 5'- gGGGGGgacggUGGGccggagcgaaaGGAGGGAGGGGggGc -3' miRNA: 3'- aCCCCCaa---ACCC-----------CCUCCUUCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 30206 | 0.78 | 0.189995 |
Target: 5'- gUGGGGGag-GGGGGuGGggGGuGGggGg -3' miRNA: 3'- -ACCCCCaaaCCCCCuCCuuCC-CCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 7498 | 0.78 | 0.176338 |
Target: 5'- gGGGGGgacggUGGGccggagcgaaaGGAGGGAGGGGggGc -3' miRNA: 3'- aCCCCCaa---ACCC-----------CCUCCUUCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 156321 | 0.77 | 0.209642 |
Target: 5'- cGGGGGacgggagGGGGccGAGGggGGGGggGg -3' miRNA: 3'- aCCCCCaaa----CCCC--CUCCuuCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 100864 | 0.77 | 0.209642 |
Target: 5'- cGGGGccgcGGGGGAGGcGGGGGAGGg -3' miRNA: 3'- aCCCCcaaaCCCCCUCCuUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 154776 | 0.77 | 0.204572 |
Target: 5'- cGGGGaga--GGGGAGGAGGGGGGAGg -3' miRNA: 3'- aCCCCcaaacCCCCUCCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 30813 | 0.77 | 0.209642 |
Target: 5'- cGGGGGacgggagGGGGccGAGGggGGGGggGg -3' miRNA: 3'- aCCCCCaaa----CCCC--CUCCuuCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 116263 | 0.77 | 0.204572 |
Target: 5'- aGGGGGgc-GGGGGuAGGGgcGGGGGggGa -3' miRNA: 3'- aCCCCCaaaCCCCC-UCCU--UCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 16711 | 0.77 | 0.199608 |
Target: 5'- gGGGGGUgUGGGGGGGuuccguAGGGGAu- -3' miRNA: 3'- aCCCCCAaACCCCCUCcu----UCCCCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 115305 | 0.77 | 0.199608 |
Target: 5'- -cGGGGUUgugGGGGGGGGAAaGGGAGu -3' miRNA: 3'- acCCCCAAa--CCCCCUCCUUcCCCUUu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 29268 | 0.77 | 0.204572 |
Target: 5'- cGGGGaga--GGGGAGGAGGGGGGAGg -3' miRNA: 3'- aCCCCcaaacCCCCUCCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 72335 | 0.76 | 0.231017 |
Target: 5'- cGGGcGGgccgcggGGGGGAGGggGGGcGggGg -3' miRNA: 3'- aCCC-CCaaa----CCCCCUCCuuCCC-CuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 127483 | 0.76 | 0.24823 |
Target: 5'- cGGGGGgaggGGGGGAGGGguGGGcGGGu- -3' miRNA: 3'- aCCCCCaaa-CCCCCUCCU--UCC-CCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 143879 | 0.76 | 0.254199 |
Target: 5'- cGGGGGUggGGGuGGGGcGguGGGGAAGc -3' miRNA: 3'- aCCCCCAaaCCC-CCUC-CuuCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 61264 | 0.76 | 0.23664 |
Target: 5'- cGGGGGc---GGGGAGGggGGGGu-- -3' miRNA: 3'- aCCCCCaaacCCCCUCCuuCCCCuuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 10387 | 0.76 | 0.254199 |
Target: 5'- cGGGGGUcUGGGccggcGGGGuGAGGGGGAu- -3' miRNA: 3'- aCCCCCAaACCC-----CCUC-CUUCCCCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 8862 | 0.75 | 0.266491 |
Target: 5'- cGGGGGgugGGGcGGGGGAAaGGGAGGa -3' miRNA: 3'- aCCCCCaaaCCC-CCUCCUUcCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 155041 | 0.75 | 0.288483 |
Target: 5'- gGGGGGgacccgGGcggcucgcgcgcguaGGGGGGAAGGGGggGg -3' miRNA: 3'- aCCCCCaaa---CC---------------CCCUCCUUCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 116917 | 0.75 | 0.272815 |
Target: 5'- cGGGcGGga-GGGGGAGGAggccggaguGGGGGggGu -3' miRNA: 3'- aCCC-CCaaaCCCCCUCCU---------UCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 43045 | 0.75 | 0.279259 |
Target: 5'- gUGGGGGUgcGGGGGcGGuGGGGGu-- -3' miRNA: 3'- -ACCCCCAaaCCCCCuCCuUCCCCuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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