miRNA display CGI


Results 81 - 100 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 30206 0.78 0.189995
Target:  5'- gUGGGGGag-GGGGGuGGggGGuGGggGg -3'
miRNA:   3'- -ACCCCCaaaCCCCCuCCuuCC-CCuuU- -5'
21559 5' -59.1 NC_004812.1 + 30697 0.78 0.19475
Target:  5'- aGGGGGccgcUGGGGaGAGGGacggGGGGGAGAg -3'
miRNA:   3'- aCCCCCaa--ACCCC-CUCCU----UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 156205 0.78 0.19475
Target:  5'- aGGGGGccgcUGGGGaGAGGGacggGGGGGAGAg -3'
miRNA:   3'- aCCCCCaa--ACCCC-CUCCU----UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 16711 0.77 0.199608
Target:  5'- gGGGGGUgUGGGGGGGuuccguAGGGGAu- -3'
miRNA:   3'- aCCCCCAaACCCCCUCcu----UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 115305 0.77 0.199608
Target:  5'- -cGGGGUUgugGGGGGGGGAAaGGGAGu -3'
miRNA:   3'- acCCCCAAa--CCCCCUCCUUcCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 154776 0.77 0.204572
Target:  5'- cGGGGaga--GGGGAGGAGGGGGGAGg -3'
miRNA:   3'- aCCCCcaaacCCCCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 116263 0.77 0.204572
Target:  5'- aGGGGGgc-GGGGGuAGGGgcGGGGGggGa -3'
miRNA:   3'- aCCCCCaaaCCCCC-UCCU--UCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 29268 0.77 0.204572
Target:  5'- cGGGGaga--GGGGAGGAGGGGGGAGg -3'
miRNA:   3'- aCCCCcaaacCCCCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 100864 0.77 0.209642
Target:  5'- cGGGGccgcGGGGGAGGcGGGGGAGGg -3'
miRNA:   3'- aCCCCcaaaCCCCCUCCuUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 30813 0.77 0.209642
Target:  5'- cGGGGGacgggagGGGGccGAGGggGGGGggGg -3'
miRNA:   3'- aCCCCCaaa----CCCC--CUCCuuCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 156321 0.77 0.209642
Target:  5'- cGGGGGacgggagGGGGccGAGGggGGGGggGg -3'
miRNA:   3'- aCCCCCaaa----CCCC--CUCCuuCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 72335 0.76 0.231017
Target:  5'- cGGGcGGgccgcggGGGGGAGGggGGGcGggGg -3'
miRNA:   3'- aCCC-CCaaa----CCCCCUCCuuCCC-CuuU- -5'
21559 5' -59.1 NC_004812.1 + 61264 0.76 0.23664
Target:  5'- cGGGGGc---GGGGAGGggGGGGu-- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCuuCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 127483 0.76 0.24823
Target:  5'- cGGGGGgaggGGGGGAGGGguGGGcGGGu- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCU--UCC-CCUuu -5'
21559 5' -59.1 NC_004812.1 + 143879 0.76 0.254199
Target:  5'- cGGGGGUggGGGuGGGGcGguGGGGAAGc -3'
miRNA:   3'- aCCCCCAaaCCC-CCUC-CuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 10387 0.76 0.254199
Target:  5'- cGGGGGUcUGGGccggcGGGGuGAGGGGGAu- -3'
miRNA:   3'- aCCCCCAaACCC-----CCUC-CUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 8862 0.75 0.266491
Target:  5'- cGGGGGgugGGGcGGGGGAAaGGGAGGa -3'
miRNA:   3'- aCCCCCaaaCCC-CCUCCUUcCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 39763 0.75 0.266491
Target:  5'- cGGGGGgugGGGcGGGGGAAaGGGAGGa -3'
miRNA:   3'- aCCCCCaaaCCC-CCUCCUUcCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 127004 0.75 0.266491
Target:  5'- aGGuGGGguaGGGcGGGGGggGGGGAGc -3'
miRNA:   3'- aCC-CCCaaaCCC-CCUCCuuCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 135116 0.75 0.272815
Target:  5'- aGGGGGUgggccUGGGGuGGGGuguuuGGGGAGGa -3'
miRNA:   3'- aCCCCCAa----ACCCC-CUCCuu---CCCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.