miRNA display CGI


Results 101 - 120 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 147818 0.75 0.272815
Target:  5'- cGGGcGGga-GGGGGAGGAggccggaguGGGGGggGu -3'
miRNA:   3'- aCCC-CCaaaCCCCCUCCU---------UCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 116917 0.75 0.272815
Target:  5'- cGGGcGGga-GGGGGAGGAggccggaguGGGGGggGu -3'
miRNA:   3'- aCCC-CCaaaCCCCCUCCU---------UCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 99097 0.75 0.279259
Target:  5'- aGGGGGgcggggugUUGGGGGAGaGGGagaacgcuGGGGAGAa -3'
miRNA:   3'- aCCCCCa-------AACCCCCUC-CUU--------CCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 118569 0.75 0.279259
Target:  5'- aGGGGGg--GGGGGGGGuggguGGGuGAGAg -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuu---CCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 43011 0.75 0.279259
Target:  5'- gUGGGGGUgcGGGGGcGGuGGGGGu-- -3'
miRNA:   3'- -ACCCCCAaaCCCCCuCCuUCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 149470 0.75 0.279259
Target:  5'- aGGGGGg--GGGGGGGGuggguGGGuGAGAg -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuu---CCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 1975 0.75 0.279259
Target:  5'- cGGGGGgaggGGGGGAGGGGuGGcGGGu- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCUU-CC-CCUuu -5'
21559 5' -59.1 NC_004812.1 + 43045 0.75 0.279259
Target:  5'- gUGGGGGUgcGGGGGcGGuGGGGGu-- -3'
miRNA:   3'- -ACCCCCAaaCCCCCuCCuUCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 59626 0.75 0.285823
Target:  5'- gUGGGGGUggGGcGGGAGcGGccgcGGGGGAu- -3'
miRNA:   3'- -ACCCCCAaaCC-CCCUC-CU----UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 155041 0.75 0.288483
Target:  5'- gGGGGGgacccgGGcggcucgcgcgcguaGGGGGGAAGGGGggGg -3'
miRNA:   3'- aCCCCCaaa---CC---------------CCCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 29533 0.75 0.288483
Target:  5'- gGGGGGgacccgGGcggcucgcgcgcguaGGGGGGAAGGGGggGg -3'
miRNA:   3'- aCCCCCaaa---CC---------------CCCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 118596 0.74 0.306245
Target:  5'- aGGGGcggUGGGGGuccGAGGGGGAGAg -3'
miRNA:   3'- aCCCCcaaACCCCCuc-CUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 149497 0.74 0.306245
Target:  5'- aGGGGcggUGGGGGuccGAGGGGGAGAg -3'
miRNA:   3'- aCCCCcaaACCCCCuc-CUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 17325 0.74 0.311168
Target:  5'- cGGGGGUgguggUGGGGGcgggggugguggugGGGgcGGGGGu- -3'
miRNA:   3'- aCCCCCAa----ACCCCC--------------UCCuuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 17379 0.74 0.311168
Target:  5'- cGGGGGUgguggUGGGGGcgggggugguggugGGGgcGGGGGu- -3'
miRNA:   3'- aCCCCCAa----ACCCCC--------------UCCuuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 6530 0.74 0.32047
Target:  5'- aGGGGGg--GGcGGGGGGccGAGGGGGc- -3'
miRNA:   3'- aCCCCCaaaCC-CCCUCC--UUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 37431 0.74 0.32047
Target:  5'- aGGGGGg--GGcGGGGGGccGAGGGGGc- -3'
miRNA:   3'- aCCCCCaaaCC-CCCUCC--UUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 40592 0.74 0.32047
Target:  5'- cGGGGGa---GGGGAGGGggcgcGGGGGAGGg -3'
miRNA:   3'- aCCCCCaaacCCCCUCCU-----UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 148630 0.74 0.327765
Target:  5'- cGaGGGGUgcgcGGGGGAGGgGAGGGcGAGGg -3'
miRNA:   3'- aC-CCCCAaa--CCCCCUCC-UUCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 148578 0.74 0.327765
Target:  5'- cGaGGGGUgcgcGGGGGAGGgGAGGGcGAGGg -3'
miRNA:   3'- aC-CCCCAaa--CCCCCUCC-UUCCC-CUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.