Results 81 - 100 of 260 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 33196 | 0.7 | 0.507565 |
Target: 5'- cGGGGGUcucGGGGGucuccgcggAGGAcGGGGGc- -3' miRNA: 3'- aCCCCCAaa-CCCCC---------UCCUuCCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 100114 | 0.7 | 0.497992 |
Target: 5'- cGcGGGc--GGGGGAgGGGAGGGGAGg -3' miRNA: 3'- aCcCCCaaaCCCCCU-CCUUCCCCUUu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 36585 | 0.7 | 0.495135 |
Target: 5'- cGGGGGgccGGGGGucucccagggccacGGGggGGcGGggGu -3' miRNA: 3'- aCCCCCaaaCCCCC--------------UCCuuCC-CCuuU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 107363 | 0.7 | 0.495135 |
Target: 5'- uUGGGGGcg-GGGGGAuGGccggaacgguggguGAGGGGGc- -3' miRNA: 3'- -ACCCCCaaaCCCCCU-CC--------------UUCCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 5684 | 0.7 | 0.495135 |
Target: 5'- cGGGGGgccGGGGGucucccagggccacGGGggGGcGGggGu -3' miRNA: 3'- aCCCCCaaaCCCCC--------------UCCuuCC-CCuuU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 118509 | 0.71 | 0.4885 |
Target: 5'- aGGGGa---GGGGGAGGAgggaagaaAGGGGGc- -3' miRNA: 3'- aCCCCcaaaCCCCCUCCU--------UCCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 108937 | 0.71 | 0.4885 |
Target: 5'- cGGGGGUcgUGGGucugucGGGGGcgcGGGGGAu- -3' miRNA: 3'- aCCCCCAa-ACCC------CCUCCu--UCCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 149410 | 0.71 | 0.4885 |
Target: 5'- aGGGGa---GGGGGAGGAgggaagaaAGGGGGc- -3' miRNA: 3'- aCCCCcaaaCCCCCUCCU--------UCCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 71138 | 0.71 | 0.482846 |
Target: 5'- cGGGGGUUcGGGGGcgcgcgaguucgucgGGGGgcAGGGcGAAGg -3' miRNA: 3'- aCCCCCAAaCCCCC---------------UCCU--UCCC-CUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 47838 | 0.71 | 0.479094 |
Target: 5'- aGGGcGGUggGGGaGGGGGAgAGGGGc-- -3' miRNA: 3'- aCCC-CCAaaCCC-CCUCCU-UCCCCuuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 85973 | 0.71 | 0.479094 |
Target: 5'- uUGGuGGGg--GGGGGAacgcuGGAAaGGGGAGGu -3' miRNA: 3'- -ACC-CCCaaaCCCCCU-----CCUU-CCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 11921 | 0.71 | 0.479094 |
Target: 5'- gUGGGGGUggGGcGGcGGGgcGGGGGu- -3' miRNA: 3'- -ACCCCCAaaCC-CCcUCCuuCCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 31819 | 0.71 | 0.469778 |
Target: 5'- cGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3' miRNA: 3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 31871 | 0.71 | 0.469778 |
Target: 5'- cGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3' miRNA: 3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 35546 | 0.71 | 0.469778 |
Target: 5'- cGGGGGgcgcgggcGGGGcccggauaGAGGGAGGGGGc- -3' miRNA: 3'- aCCCCCaaa-----CCCC--------CUCCUUCCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 31724 | 0.71 | 0.469778 |
Target: 5'- cGGGGGUccUGGGGGuccGGGGuggccGGGGGu- -3' miRNA: 3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 823 | 0.71 | 0.469778 |
Target: 5'- cGGGGGUccUGGGGGuccGGGGuggccGGGGGu- -3' miRNA: 3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 918 | 0.71 | 0.469778 |
Target: 5'- cGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3' miRNA: 3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 78963 | 0.71 | 0.468851 |
Target: 5'- cGGGGGUcgGGGgugcgccGGGGGucGGGGGu- -3' miRNA: 3'- aCCCCCAaaCCC-------CCUCCuuCCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 16763 | 0.71 | 0.460555 |
Target: 5'- cGGGGGgcgcGGGGGccGGAGGGuGAGGg -3' miRNA: 3'- aCCCCCaaa-CCCCCucCUUCCC-CUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home