miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 6081 0.67 0.725204
Target:  5'- aGGGGGgcgaggggaaGGGGGucggcGGGAAcGGGGGc- -3'
miRNA:   3'- aCCCCCaaa-------CCCCC-----UCCUU-CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 6130 0.87 0.042861
Target:  5'- aGGGGGa--GGGGGAGGggGGGGggGu -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 6156 0.68 0.637079
Target:  5'- aGGGGGUcgGGGGccuGGGcGgcGGGGGu- -3'
miRNA:   3'- aCCCCCAaaCCCC---CUC-CuuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 6324 0.67 0.687547
Target:  5'- cGGGGGgccccGGGcaGGAGGGgcagcAGGGGGc- -3'
miRNA:   3'- aCCCCCaaa--CCC--CCUCCU-----UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 6530 0.74 0.32047
Target:  5'- aGGGGGg--GGcGGGGGGccGAGGGGGc- -3'
miRNA:   3'- aCCCCCaaaCC-CCCUCC--UUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 6608 0.84 0.073196
Target:  5'- cGGGGGUgggUGGGuGGGGuGggGGGGAAAa -3'
miRNA:   3'- aCCCCCAa--ACCC-CCUC-CuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 6649 0.8 0.144111
Target:  5'- aGGGGGU--GGGGGAGauGGGGGAGAg -3'
miRNA:   3'- aCCCCCAaaCCCCCUCcuUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 6693 0.69 0.57646
Target:  5'- aGGGGGcguguguguUggGGGGGAGaGAAGGaGAAAg -3'
miRNA:   3'- aCCCCC---------AaaCCCCCUC-CUUCCcCUUU- -5'
21559 5' -59.1 NC_004812.1 + 6933 0.74 0.335183
Target:  5'- gGGGccGGggUGGGGG-GGAAGcGGGGAAa -3'
miRNA:   3'- aCCC--CCaaACCCCCuCCUUC-CCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 6974 0.8 0.133478
Target:  5'- aGGGGGgggGGGGGGGGAaAGGGGu-- -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCU-UCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 7233 1.06 0.002171
Target:  5'- cUGGGGGUUUGGGGGAGGAAGGGGAAAa -3'
miRNA:   3'- -ACCCCCAAACCCCCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 7498 0.78 0.176338
Target:  5'- gGGGGGgacggUGGGccggagcgaaaGGAGGGAGGGGggGc -3'
miRNA:   3'- aCCCCCaa---ACCC-----------CCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 7546 0.67 0.717354
Target:  5'- cGcGGGGac-GGGGGAGcgcGGGGAGAc -3'
miRNA:   3'- aC-CCCCaaaCCCCCUCcuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 8862 0.75 0.266491
Target:  5'- cGGGGGgugGGGcGGGGGAAaGGGAGGa -3'
miRNA:   3'- aCCCCCaaaCCC-CCUCCUUcCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 9637 0.67 0.731058
Target:  5'- cGuGGGUgcgucGGGGGAaacucagcgccaccgGGGAGGGGGAc -3'
miRNA:   3'- aCcCCCAaa---CCCCCU---------------CCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 10095 0.73 0.350385
Target:  5'- gUGGGGGUcgcugUGGGGGugagaggugAGGAAGGGaAAAg -3'
miRNA:   3'- -ACCCCCAa----ACCCCC---------UCCUUCCCcUUU- -5'
21559 5' -59.1 NC_004812.1 + 10387 0.76 0.254199
Target:  5'- cGGGGGUcUGGGccggcGGGGuGAGGGGGAu- -3'
miRNA:   3'- aCCCCCAaACCC-----CCUC-CUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 10477 0.69 0.605676
Target:  5'- gUGGGGaccgcGGGGGGGAgucggcucgggguAGGGGAGAg -3'
miRNA:   3'- -ACCCCcaaacCCCCUCCU-------------UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 10705 0.66 0.746517
Target:  5'- cGGGGGcgUccacgggcuccaGGGGGAGGGgcGGcGGGGc- -3'
miRNA:   3'- aCCCCCaaA------------CCCCCUCCU--UC-CCCUuu -5'
21559 5' -59.1 NC_004812.1 + 11443 0.68 0.647213
Target:  5'- gGGaGGGUgccGGGaGccGGGAGGGGGAAAg -3'
miRNA:   3'- aCC-CCCAaacCCC-C--UCCUUCCCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.