Results 61 - 80 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 24232 | 0.66 | 0.746517 |
Target: 5'- aGGGGc----GGGGAaacagugcgGGAAGGGGAAGg -3' miRNA: 3'- aCCCCcaaacCCCCU---------CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24306 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24345 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24384 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24423 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24462 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24501 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24540 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24579 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24618 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24657 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24696 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24735 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24774 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24813 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24852 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24891 | 0.78 | 0.176338 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGu- -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 27104 | 0.66 | 0.774794 |
Target: 5'- cGGGGcccUUGGGcGGAGGcuGcGGGAGg -3' miRNA: 3'- aCCCCca-AACCC-CCUCCuuC-CCCUUu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 27803 | 0.74 | 0.335183 |
Target: 5'- gGGcGGGgccGGGGGGGGAGcGGGGGu- -3' miRNA: 3'- aCC-CCCaaaCCCCCUCCUU-CCCCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 29268 | 0.77 | 0.204572 |
Target: 5'- cGGGGaga--GGGGAGGAGGGGGGAGg -3' miRNA: 3'- aCCCCcaaacCCCCUCCUUCCCCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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