miRNA display CGI


Results 81 - 100 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 29444 0.79 0.159492
Target:  5'- cGGGG----GGGGGGGGAGGGGGGAc -3'
miRNA:   3'- aCCCCcaaaCCCCCUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 29533 0.75 0.288483
Target:  5'- gGGGGGgacccgGGcggcucgcgcgcguaGGGGGGAAGGGGggGg -3'
miRNA:   3'- aCCCCCaaa---CC---------------CCCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 30039 0.79 0.155513
Target:  5'- aGGGcGGgagGGGcGGGGGAGGGGGGAGg -3'
miRNA:   3'- aCCC-CCaaaCCC-CCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 30206 0.78 0.189995
Target:  5'- gUGGGGGag-GGGGGuGGggGGuGGggGg -3'
miRNA:   3'- -ACCCCCaaaCCCCCuCCuuCC-CCuuU- -5'
21559 5' -59.1 NC_004812.1 + 30375 0.69 0.596584
Target:  5'- cGGGGGa---GGGGAGGGGcGGGGc-- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCUU-CCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 30660 0.66 0.774794
Target:  5'- cGcGGGaccGGGGccgcgcGAGGAAGGGGAGGg -3'
miRNA:   3'- aCcCCCaaaCCCC------CUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 30697 0.78 0.19475
Target:  5'- aGGGGGccgcUGGGGaGAGGGacggGGGGGAGAg -3'
miRNA:   3'- aCCCCCaa--ACCCC-CUCCU----UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 30748 0.8 0.144111
Target:  5'- aGGGGGacgggaGGGGGAcGGGAGGGGGAc -3'
miRNA:   3'- aCCCCCaaa---CCCCCU-CCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 30813 0.77 0.209642
Target:  5'- cGGGGGacgggagGGGGccGAGGggGGGGggGg -3'
miRNA:   3'- aCCCCCaaa----CCCC--CUCCuuCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 30847 0.91 0.024929
Target:  5'- gGGGGGgggGGGGGGGGggGGGGAGGa -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 31141 0.69 0.606687
Target:  5'- cGGGGcccaaGGcucccgcgcGGGAGGAGGGGGggGu -3'
miRNA:   3'- aCCCCcaaa-CC---------CCCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 31724 0.71 0.469778
Target:  5'- cGGGGGUccUGGGGGuccGGGGuggccGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 31766 0.71 0.451428
Target:  5'- cUGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3'
miRNA:   3'- -ACCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 31819 0.71 0.469778
Target:  5'- cGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 31871 0.71 0.469778
Target:  5'- cGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 33141 0.68 0.637079
Target:  5'- gUGGGGGUcucGGGGGucucGGGGGucucGGGGGu- -3'
miRNA:   3'- -ACCCCCAaa-CCCCC----UCCUU----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 33196 0.7 0.507565
Target:  5'- cGGGGGUcucGGGGGucuccgcggAGGAcGGGGGc- -3'
miRNA:   3'- aCCCCCAaa-CCCCC---------UCCUuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 34001 0.79 0.155513
Target:  5'- gUGGGGGg--GaGGGGAGGggGaGGGAGu -3'
miRNA:   3'- -ACCCCCaaaC-CCCCUCCuuC-CCCUUu -5'
21559 5' -59.1 NC_004812.1 + 34449 0.69 0.556493
Target:  5'- gUGGGauGGUcgUGGGaGGGGGAAGGGa--- -3'
miRNA:   3'- -ACCC--CCAa-ACCC-CCUCCUUCCCcuuu -5'
21559 5' -59.1 NC_004812.1 + 35532 0.67 0.704503
Target:  5'- aGGGGcGg--GGGGGcgggacgcccgcgcGGGGAGGGGc-- -3'
miRNA:   3'- aCCCC-CaaaCCCCC--------------UCCUUCCCCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.