miRNA display CGI


Results 101 - 120 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 35546 0.71 0.469778
Target:  5'- cGGGGGgcgcgggcGGGGcccggauaGAGGGAGGGGGc- -3'
miRNA:   3'- aCCCCCaaa-----CCCC--------CUCCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 35675 0.71 0.451428
Target:  5'- cGGGcGcggUGGGGGAGGggGcGGGGc- -3'
miRNA:   3'- aCCCcCaa-ACCCCCUCCuuC-CCCUuu -5'
21559 5' -59.1 NC_004812.1 + 35982 0.72 0.436145
Target:  5'- cGGGGGgccgggguccggccGGGGAGGcGGGGGAGu -3'
miRNA:   3'- aCCCCCaaac----------CCCCUCCuUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 36019 0.68 0.6462
Target:  5'- -uGGGGUccGGGGGGcgggcgcGGAGGcGGGAGGg -3'
miRNA:   3'- acCCCCAaaCCCCCU-------CCUUC-CCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 36173 0.66 0.733003
Target:  5'- aGGGGcacggaggcgGGGGGAGGcccGGGaGGAGAa -3'
miRNA:   3'- aCCCCcaaa------CCCCCUCCu--UCC-CCUUU- -5'
21559 5' -59.1 NC_004812.1 + 36585 0.7 0.495135
Target:  5'- cGGGGGgccGGGGGucucccagggccacGGGggGGcGGggGu -3'
miRNA:   3'- aCCCCCaaaCCCCC--------------UCCuuCC-CCuuU- -5'
21559 5' -59.1 NC_004812.1 + 36853 0.68 0.667437
Target:  5'- aGGGGGcagggcccGGGGAGGccgcGGGGGGGc -3'
miRNA:   3'- aCCCCCaaac----CCCCUCCu---UCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 36891 0.72 0.39718
Target:  5'- cGcGGGGUgguaggcgccgGGGGGcgagGGGAAGGGGAc- -3'
miRNA:   3'- aC-CCCCAaa---------CCCCC----UCCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 36897 0.72 0.424661
Target:  5'- cGaGGGUcgGGGGGAcGAGGGGGAc- -3'
miRNA:   3'- aCcCCCAaaCCCCCUcCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 36982 0.67 0.725204
Target:  5'- aGGGGGgcgaggggaaGGGGGucggcGGGAAcGGGGGc- -3'
miRNA:   3'- aCCCCCaaa-------CCCCC-----UCCUU-CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 37057 0.68 0.637079
Target:  5'- aGGGGGUcgGGGGccuGGGcGgcGGGGGu- -3'
miRNA:   3'- aCCCCCAaaCCCC---CUC-CuuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 37225 0.67 0.687547
Target:  5'- cGGGGGgccccGGGcaGGAGGGgcagcAGGGGGc- -3'
miRNA:   3'- aCCCCCaaa--CCC--CCUCCU-----UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 37431 0.74 0.32047
Target:  5'- aGGGGGg--GGcGGGGGGccGAGGGGGc- -3'
miRNA:   3'- aCCCCCaaaCC-CCCUCC--UUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 37509 0.84 0.073196
Target:  5'- cGGGGGUgggUGGGuGGGGuGggGGGGAAAa -3'
miRNA:   3'- aCCCCCAa--ACCC-CCUC-CuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 37550 0.8 0.144111
Target:  5'- aGGGGGU--GGGGGAGauGGGGGAGAg -3'
miRNA:   3'- aCCCCCAaaCCCCCUCcuUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 37594 0.69 0.57646
Target:  5'- aGGGGGcguguguguUggGGGGGAGaGAAGGaGAAAg -3'
miRNA:   3'- aCCCCC---------AaaCCCCCUC-CUUCCcCUUU- -5'
21559 5' -59.1 NC_004812.1 + 37834 0.74 0.335183
Target:  5'- gGGGccGGggUGGGGG-GGAAGcGGGGAAa -3'
miRNA:   3'- aCCC--CCaaACCCCCuCCUUC-CCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 37868 0.81 0.108565
Target:  5'- gUGGGcaaGGg--GGGGGGGGggGGGGAAAg -3'
miRNA:   3'- -ACCC---CCaaaCCCCCUCCuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 38134 1.06 0.002171
Target:  5'- cUGGGGGUUUGGGGGAGGAAGGGGAAAa -3'
miRNA:   3'- -ACCCCCAAACCCCCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 38399 0.78 0.176338
Target:  5'- gGGGGGgacggUGGGccggagcgaaaGGAGGGAGGGGggGc -3'
miRNA:   3'- aCCCCCaa---ACCC-----------CCUCCUUCCCCuuU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.