miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 156444 0.66 0.774794
Target:  5'- cGGGGGgc-GGGGGuucguucGGggGGGc--- -3'
miRNA:   3'- aCCCCCaaaCCCCCu------CCuuCCCcuuu -5'
21559 5' -59.1 NC_004812.1 + 156355 0.91 0.024929
Target:  5'- gGGGGGgggGGGGGGGGggGGGGAGGa -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 156321 0.77 0.209642
Target:  5'- cGGGGGacgggagGGGGccGAGGggGGGGggGg -3'
miRNA:   3'- aCCCCCaaa----CCCC--CUCCuuCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 156256 0.8 0.144111
Target:  5'- aGGGGGacgggaGGGGGAcGGGAGGGGGAc -3'
miRNA:   3'- aCCCCCaaa---CCCCCU-CCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 156205 0.78 0.19475
Target:  5'- aGGGGGccgcUGGGGaGAGGGacggGGGGGAGAg -3'
miRNA:   3'- aCCCCCaa--ACCCC-CUCCU----UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 156168 0.66 0.774794
Target:  5'- cGcGGGaccGGGGccgcgcGAGGAAGGGGAGGg -3'
miRNA:   3'- aCcCCCaaaCCCC------CUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 155883 0.69 0.596584
Target:  5'- cGGGGGa---GGGGAGGGGcGGGGc-- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCUU-CCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 155714 0.78 0.189995
Target:  5'- gUGGGGGag-GGGGGuGGggGGuGGggGg -3'
miRNA:   3'- -ACCCCCaaaCCCCCuCCuuCC-CCuuU- -5'
21559 5' -59.1 NC_004812.1 + 155548 0.79 0.155513
Target:  5'- aGGGcGGgagGGGcGGGGGAGGGGGGAGg -3'
miRNA:   3'- aCCC-CCaaaCCC-CCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 155161 0.68 0.667437
Target:  5'- aGGGcGGUcgUGGGGGcGGGGAccGGGGc-- -3'
miRNA:   3'- aCCC-CCAa-ACCCCC-UCCUU--CCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 155041 0.75 0.288483
Target:  5'- gGGGGGgacccgGGcggcucgcgcgcguaGGGGGGAAGGGGggGg -3'
miRNA:   3'- aCCCCCaaa---CC---------------CCCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 154952 0.79 0.159492
Target:  5'- cGGGG----GGGGGGGGAGGGGGGAc -3'
miRNA:   3'- aCCCCcaaaCCCCCUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 154776 0.77 0.204572
Target:  5'- cGGGGaga--GGGGAGGAGGGGGGAGg -3'
miRNA:   3'- aCCCCcaaacCCCCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 154197 0.66 0.765482
Target:  5'- aGGGGGgc--GGGGGGGAcGGGu--- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCUuCCCcuuu -5'
21559 5' -59.1 NC_004812.1 + 153452 0.82 0.095281
Target:  5'- cGGGGGgcgcggGGGGGGGcGGAGGGGAGc -3'
miRNA:   3'- aCCCCCaaa---CCCCCUC-CUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 150399 0.78 0.176338
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGu- -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 150360 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 150321 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 150282 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 150243 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.