miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 148682 0.8 0.130097
Target:  5'- cGaGGGGUgcgcGGGGGAGGGAGGGcGAGGg -3'
miRNA:   3'- aC-CCCCAaa--CCCCCUCCUUCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 148630 0.74 0.327765
Target:  5'- cGaGGGGUgcgcGGGGGAGGgGAGGGcGAGGg -3'
miRNA:   3'- aC-CCCCAaa--CCCCCUCC-UUCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 148578 0.74 0.327765
Target:  5'- cGaGGGGUgcgcGGGGGAGGgGAGGGcGAGGg -3'
miRNA:   3'- aC-CCCCAaa--CCCCCUCC-UUCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 148526 0.74 0.327765
Target:  5'- cGaGGGGUgcgcGGGGGAGGgGAGGGcGAGGg -3'
miRNA:   3'- aC-CCCCAaa--CCCCCUCC-UUCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 148503 0.73 0.374093
Target:  5'- -cGGGGUUccGGGccGGGGGAGGGGGGGc -3'
miRNA:   3'- acCCCCAAa-CCC--CCUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 148474 0.74 0.327765
Target:  5'- cGaGGGGUgcgcGGGGGAGGgGAGGGcGAGGg -3'
miRNA:   3'- aC-CCCCAaa--CCCCCUCC-UUCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 148220 0.69 0.596584
Target:  5'- gGGGGGgccgcUUGGguggccggcGGGGGGAgcAGGGGGc- -3'
miRNA:   3'- aCCCCCa----AACC---------CCCUCCU--UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 147818 0.75 0.272815
Target:  5'- cGGGcGGga-GGGGGAGGAggccggaguGGGGGggGu -3'
miRNA:   3'- aCCC-CCaaaCCCCCUCCU---------UCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 146719 0.79 0.15512
Target:  5'- cGGGGGgg-GGGGGAaaggaggaaagaaGGGAGGGGAu- -3'
miRNA:   3'- aCCCCCaaaCCCCCU-------------CCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 146642 0.78 0.171984
Target:  5'- cUGGGGGUUgUGuGGGuGGGGAGGGGAGc -3'
miRNA:   3'- -ACCCCCAA-AC-CCCcUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 146003 0.69 0.566454
Target:  5'- cGGGGGUgcgGcucuaacgacGGGGAGGAAGaGGcGggGg -3'
miRNA:   3'- aCCCCCAaa-C----------CCCCUCCUUC-CC-CuuU- -5'
21559 5' -59.1 NC_004812.1 + 143947 0.71 0.451428
Target:  5'- gUGGGGGcggGGuGGGAGGAGcGcGGGAu- -3'
miRNA:   3'- -ACCCCCaaaCC-CCCUCCUU-C-CCCUuu -5'
21559 5' -59.1 NC_004812.1 + 143879 0.76 0.254199
Target:  5'- cGGGGGUggGGGuGGGGcGguGGGGAAGc -3'
miRNA:   3'- aCCCCCAaaCCC-CCUC-CuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 140783 0.79 0.166885
Target:  5'- gUGGGGGUgcgauguggucGGGGGAGGGgauGGGGAGg -3'
miRNA:   3'- -ACCCCCAaa---------CCCCCUCCUu--CCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 139941 0.67 0.67751
Target:  5'- cGGcGGGUUcugGGGcGGGGGGccGGGAGc -3'
miRNA:   3'- aCC-CCCAAa--CCC-CCUCCUucCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 139637 0.72 0.407351
Target:  5'- cGGGGGgc-GGGGccgagaGAGGGgcAGGGGAAGa -3'
miRNA:   3'- aCCCCCaaaCCCC------CUCCU--UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 137988 0.9 0.026323
Target:  5'- cGGGGGgg-GGGGGGGGggGGGGGAGc -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 135689 0.66 0.774794
Target:  5'- aGGGGGUgguugugUGccGuGGGGAAGGGGGu- -3'
miRNA:   3'- aCCCCCAa------ACccC-CUCCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 135116 0.75 0.272815
Target:  5'- aGGGGGUgggccUGGGGuGGGGuguuuGGGGAGGa -3'
miRNA:   3'- aCCCCCAa----ACCCC-CUCCuu---CCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 132313 0.66 0.733974
Target:  5'- gGuGGGGUUgGGcGGGAcGGAAacucaacagcggccGGGGAGAg -3'
miRNA:   3'- aC-CCCCAAaCC-CCCU-CCUU--------------CCCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.