miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 132265 0.68 0.626942
Target:  5'- cUGGGGGcgagggugugUGGuGGuGGGGggGGGGuAAGa -3'
miRNA:   3'- -ACCCCCaa--------ACC-CC-CUCCuuCCCC-UUU- -5'
21559 5' -59.1 NC_004812.1 + 131639 0.87 0.042861
Target:  5'- aGGGGGa--GGGGGAGGggGGGGggGu -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 131587 0.82 0.097808
Target:  5'- cGGGGGg-UGGGaaGGAGGGAGGGGAGGg -3'
miRNA:   3'- aCCCCCaaACCC--CCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 127562 0.67 0.687547
Target:  5'- cGGGGGgcgcGGGGGAGGggGc----- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCuuCcccuuu -5'
21559 5' -59.1 NC_004812.1 + 127483 0.76 0.24823
Target:  5'- cGGGGGgaggGGGGGAGGGguGGGcGGGu- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCU--UCC-CCUuu -5'
21559 5' -59.1 NC_004812.1 + 127004 0.75 0.266491
Target:  5'- aGGuGGGguaGGGcGGGGGggGGGGAGc -3'
miRNA:   3'- aCC-CCCaaaCCC-CCUCCuuCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 126965 0.73 0.377335
Target:  5'- cGGGGGagagaagggaugGGGaGGGGGAGGaGGGAGAg -3'
miRNA:   3'- aCCCCCaaa---------CCC-CCUCCUUC-CCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 125543 0.66 0.774794
Target:  5'- cGGGGGgc-GGGGGuucguucGGggGGGc--- -3'
miRNA:   3'- aCCCCCaaaCCCCCu------CCuuCCCcuuu -5'
21559 5' -59.1 NC_004812.1 + 124260 0.68 0.667437
Target:  5'- aGGGcGGUcgUGGGGGcGGGGAccGGGGc-- -3'
miRNA:   3'- aCCC-CCAa-ACCCCC-UCCUU--CCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 123505 0.68 0.657334
Target:  5'- cGGGGGUcUGGGGucgggcgccGGGAGcgcggcGGGGAGGa -3'
miRNA:   3'- aCCCCCAaACCCCc--------UCCUU------CCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 123296 0.66 0.765482
Target:  5'- aGGGGGgc--GGGGGGGAcGGGu--- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCUuCCCcuuu -5'
21559 5' -59.1 NC_004812.1 + 122551 0.82 0.095281
Target:  5'- cGGGGGgcgcggGGGGGGGcGGAGGGGAGc -3'
miRNA:   3'- aCCCCCaaa---CCCCCUC-CUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 121753 0.66 0.765482
Target:  5'- cGGGGGgcgccgGGccuccGGGAGGcGGGGGc-- -3'
miRNA:   3'- aCCCCCaaa---CC-----CCCUCCuUCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 118596 0.74 0.306245
Target:  5'- aGGGGcggUGGGGGuccGAGGGGGAGAg -3'
miRNA:   3'- aCCCCcaaACCCCCuc-CUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 118569 0.75 0.279259
Target:  5'- aGGGGGg--GGGGGGGGuggguGGGuGAGAg -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuu---CCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 118509 0.71 0.4885
Target:  5'- aGGGGa---GGGGGAGGAgggaagaaAGGGGGc- -3'
miRNA:   3'- aCCCCcaaaCCCCCUCCU--------UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 117602 0.73 0.374093
Target:  5'- -cGGGGUUccGGGccGGGGGAGGGGGGGc -3'
miRNA:   3'- acCCCCAAa-CCC--CCUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 116917 0.75 0.272815
Target:  5'- cGGGcGGga-GGGGGAGGAggccggaguGGGGGggGu -3'
miRNA:   3'- aCCC-CCaaaCCCCCUCCU---------UCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 116332 0.83 0.079248
Target:  5'- aUGGGGGg--GGGGGuguAGGGAGGGGggGg -3'
miRNA:   3'- -ACCCCCaaaCCCCC---UCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 116263 0.77 0.204572
Target:  5'- aGGGGGgc-GGGGGuAGGGgcGGGGGggGa -3'
miRNA:   3'- aCCCCCaaaCCCCC-UCCU--UCCCCuuU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.