miRNA display CGI


Results 81 - 100 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 116233 0.91 0.02426
Target:  5'- aUGGGGGg--GGGGGGGGggGGGGAAc -3'
miRNA:   3'- -ACCCCCaaaCCCCCUCCuuCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 115305 0.77 0.199608
Target:  5'- -cGGGGUUgugGGGGGGGGAAaGGGAGu -3'
miRNA:   3'- acCCCCAAa--CCCCCUCCUUcCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 108937 0.71 0.4885
Target:  5'- cGGGGGUcgUGGGucugucGGGGGcgcGGGGGAu- -3'
miRNA:   3'- aCCCCCAa-ACCC------CCUCCu--UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 107363 0.7 0.495135
Target:  5'- uUGGGGGcg-GGGGGAuGGccggaacgguggguGAGGGGGc- -3'
miRNA:   3'- -ACCCCCaaaCCCCCU-CC--------------UUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 106758 0.67 0.727158
Target:  5'- cGGGGGg--GucGGAGGAGGGGcGGc- -3'
miRNA:   3'- aCCCCCaaaCccCCUCCUUCCC-CUuu -5'
21559 5' -59.1 NC_004812.1 + 105803 0.68 0.637079
Target:  5'- gGGGGGcUUGGGGGu---GGGGGc-- -3'
miRNA:   3'- aCCCCCaAACCCCCuccuUCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 105416 0.72 0.407351
Target:  5'- gUGGGGGcgcgagGGGGGaAGGAAcgcucggugcgcGGGGAGGg -3'
miRNA:   3'- -ACCCCCaaa---CCCCC-UCCUU------------CCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 104178 0.72 0.41336
Target:  5'- cGGGGGgaUGggcggcgaugcGGGGAGGGagcgagagcgagcgGGGGGAAGg -3'
miRNA:   3'- aCCCCCaaAC-----------CCCCUCCU--------------UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 102947 0.73 0.374093
Target:  5'- cGGGGGUggcGGGGGGGcGucGGGGu-- -3'
miRNA:   3'- aCCCCCAaa-CCCCCUC-CuuCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 102262 0.67 0.707478
Target:  5'- -uGGGGUc--GGcGAGGAGGGGGGAGg -3'
miRNA:   3'- acCCCCAaacCCcCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 100864 0.77 0.209642
Target:  5'- cGGGGccgcGGGGGAGGcGGGGGAGGg -3'
miRNA:   3'- aCCCCcaaaCCCCCUCCuUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 100114 0.7 0.497992
Target:  5'- cGcGGGc--GGGGGAgGGGAGGGGAGg -3'
miRNA:   3'- aCcCCCaaaCCCCCU-CCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 99836 0.85 0.060754
Target:  5'- cGGGGaGgg-GGGGGAGGAGGGGGAc- -3'
miRNA:   3'- aCCCC-CaaaCCCCCUCCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 99097 0.75 0.279259
Target:  5'- aGGGGGgcggggugUUGGGGGAGaGGGagaacgcuGGGGAGAa -3'
miRNA:   3'- aCCCCCa-------AACCCCCUC-CUU--------CCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 97760 0.73 0.374093
Target:  5'- gUGGGGGUguggUGGGGGAaaagGGAAGGa---- -3'
miRNA:   3'- -ACCCCCAa---ACCCCCU----CCUUCCccuuu -5'
21559 5' -59.1 NC_004812.1 + 91594 0.68 0.647213
Target:  5'- cUGGGucgcgcgucGGaaaUGGGGGAcccGGggGGGGAGc -3'
miRNA:   3'- -ACCC---------CCaa-ACCCCCU---CCuuCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 91164 0.66 0.750344
Target:  5'- cGGGGGccgGGGGGAccccuccccgagGGAcgcgggcucgggggcGGGGGGc- -3'
miRNA:   3'- aCCCCCaaaCCCCCU------------CCU---------------UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 91121 0.67 0.67751
Target:  5'- cGuGGGGUcgcUUGGGGGcGGGGccggucGGGGAc- -3'
miRNA:   3'- aC-CCCCA---AACCCCCuCCUU------CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 91083 0.66 0.765482
Target:  5'- cGGGGGcgaGGGGGGGcgccAGGGGc-- -3'
miRNA:   3'- aCCCCCaaaCCCCCUCcu--UCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 85973 0.71 0.479094
Target:  5'- uUGGuGGGg--GGGGGAacgcuGGAAaGGGGAGGu -3'
miRNA:   3'- -ACC-CCCaaaCCCCCU-----CCUU-CCCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.