miRNA display CGI


Results 81 - 100 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 156205 0.78 0.19475
Target:  5'- aGGGGGccgcUGGGGaGAGGGacggGGGGGAGAg -3'
miRNA:   3'- aCCCCCaa--ACCCC-CUCCU----UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 116263 0.77 0.204572
Target:  5'- aGGGGGgc-GGGGGuAGGGgcGGGGGggGa -3'
miRNA:   3'- aCCCCCaaaCCCCC-UCCU--UCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 154776 0.77 0.204572
Target:  5'- cGGGGaga--GGGGAGGAGGGGGGAGg -3'
miRNA:   3'- aCCCCcaaacCCCCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 156321 0.77 0.209642
Target:  5'- cGGGGGacgggagGGGGccGAGGggGGGGggGg -3'
miRNA:   3'- aCCCCCaaa----CCCC--CUCCuuCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 72335 0.76 0.231017
Target:  5'- cGGGcGGgccgcggGGGGGAGGggGGGcGggGg -3'
miRNA:   3'- aCCC-CCaaa----CCCCCUCCuuCCC-CuuU- -5'
21559 5' -59.1 NC_004812.1 + 127483 0.76 0.24823
Target:  5'- cGGGGGgaggGGGGGAGGGguGGGcGGGu- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCU--UCC-CCUuu -5'
21559 5' -59.1 NC_004812.1 + 143879 0.76 0.254199
Target:  5'- cGGGGGUggGGGuGGGGcGguGGGGAAGc -3'
miRNA:   3'- aCCCCCAaaCCC-CCUC-CuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 146642 0.78 0.171984
Target:  5'- cUGGGGGUUgUGuGGGuGGGGAGGGGAGc -3'
miRNA:   3'- -ACCCCCAA-AC-CCCcUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 70884 0.79 0.167726
Target:  5'- cGGGGGgg-GcGGGGAGGggGcGGGGAu -3'
miRNA:   3'- aCCCCCaaaC-CCCCUCCuuC-CCCUUu -5'
21559 5' -59.1 NC_004812.1 + 140783 0.79 0.166885
Target:  5'- gUGGGGGUgcgauguggucGGGGGAGGGgauGGGGAGg -3'
miRNA:   3'- -ACCCCCAaa---------CCCCCUCCUu--CCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 6974 0.8 0.133478
Target:  5'- aGGGGGgggGGGGGGGGAaAGGGGu-- -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCU-UCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 6649 0.8 0.144111
Target:  5'- aGGGGGU--GGGGGAGauGGGGGAGAg -3'
miRNA:   3'- aCCCCCAaaCCCCCUCcuUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 156256 0.8 0.144111
Target:  5'- aGGGGGacgggaGGGGGAcGGGAGGGGGAc -3'
miRNA:   3'- aCCCCCaaa---CCCCCU-CCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 146719 0.79 0.15512
Target:  5'- cGGGGGgg-GGGGGAaaggaggaaagaaGGGAGGGGAu- -3'
miRNA:   3'- aCCCCCaaaCCCCCU-------------CCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 155548 0.79 0.155513
Target:  5'- aGGGcGGgagGGGcGGGGGAGGGGGGAGg -3'
miRNA:   3'- aCCC-CCaaaCCC-CCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 3100 0.79 0.155513
Target:  5'- gUGGGGGg--GaGGGGAGGggGaGGGAGu -3'
miRNA:   3'- -ACCCCCaaaC-CCCCUCCuuC-CCCUUu -5'
21559 5' -59.1 NC_004812.1 + 57342 0.79 0.155513
Target:  5'- gUGGGGGgg-GGGGaGAGGAAGcaGGGAAAg -3'
miRNA:   3'- -ACCCCCaaaCCCC-CUCCUUC--CCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 154952 0.79 0.159492
Target:  5'- cGGGG----GGGGGGGGAGGGGGGAc -3'
miRNA:   3'- aCCCCcaaaCCCCCUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 57250 0.79 0.163562
Target:  5'- gUGGGcGGgcgcUGGGGGGGGggGGGGcGAc -3'
miRNA:   3'- -ACCC-CCaa--ACCCCCUCCuuCCCCuUU- -5'
21559 5' -59.1 NC_004812.1 + 8862 0.75 0.266491
Target:  5'- cGGGGGgugGGGcGGGGGAAaGGGAGGa -3'
miRNA:   3'- aCCCCCaaaCCC-CCUCCUUcCCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.