miRNA display CGI


Results 101 - 120 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 43045 0.75 0.279259
Target:  5'- gUGGGGGUgcGGGGGcGGuGGGGGu-- -3'
miRNA:   3'- -ACCCCCAaaCCCCCuCCuUCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 155041 0.75 0.288483
Target:  5'- gGGGGGgacccgGGcggcucgcgcgcguaGGGGGGAAGGGGggGg -3'
miRNA:   3'- aCCCCCaaa---CC---------------CCCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 118596 0.74 0.306245
Target:  5'- aGGGGcggUGGGGGuccGAGGGGGAGAg -3'
miRNA:   3'- aCCCCcaaACCCCCuc-CUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 6530 0.74 0.32047
Target:  5'- aGGGGGg--GGcGGGGGGccGAGGGGGc- -3'
miRNA:   3'- aCCCCCaaaCC-CCCUCC--UUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 51926 0.74 0.327765
Target:  5'- aGGaGGGUgagGGGGGAGGAAacGGGAc- -3'
miRNA:   3'- aCC-CCCAaa-CCCCCUCCUUc-CCCUuu -5'
21559 5' -59.1 NC_004812.1 + 156321 0.77 0.209642
Target:  5'- cGGGGGacgggagGGGGccGAGGggGGGGggGg -3'
miRNA:   3'- aCCCCCaaa----CCCC--CUCCuuCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 154776 0.77 0.204572
Target:  5'- cGGGGaga--GGGGAGGAGGGGGGAGg -3'
miRNA:   3'- aCCCCcaaacCCCCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 155548 0.79 0.155513
Target:  5'- aGGGcGGgagGGGcGGGGGAGGGGGGAGg -3'
miRNA:   3'- aCCC-CCaaaCCC-CCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 3100 0.79 0.155513
Target:  5'- gUGGGGGg--GaGGGGAGGggGaGGGAGu -3'
miRNA:   3'- -ACCCCCaaaC-CCCCUCCuuC-CCCUUu -5'
21559 5' -59.1 NC_004812.1 + 57342 0.79 0.155513
Target:  5'- gUGGGGGgg-GGGGaGAGGAAGcaGGGAAAg -3'
miRNA:   3'- -ACCCCCaaaCCCC-CUCCUUC--CCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 154952 0.79 0.159492
Target:  5'- cGGGG----GGGGGGGGAGGGGGGAc -3'
miRNA:   3'- aCCCCcaaaCCCCCUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 57250 0.79 0.163562
Target:  5'- gUGGGcGGgcgcUGGGGGGGGggGGGGcGAc -3'
miRNA:   3'- -ACCC-CCaa--ACCCCCUCCuuCCCCuUU- -5'
21559 5' -59.1 NC_004812.1 + 140783 0.79 0.166885
Target:  5'- gUGGGGGUgcgauguggucGGGGGAGGGgauGGGGAGg -3'
miRNA:   3'- -ACCCCCAaa---------CCCCCUCCUu--CCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 70884 0.79 0.167726
Target:  5'- cGGGGGgg-GcGGGGAGGggGcGGGGAu -3'
miRNA:   3'- aCCCCCaaaC-CCCCUCCuuC-CCCUUu -5'
21559 5' -59.1 NC_004812.1 + 146642 0.78 0.171984
Target:  5'- cUGGGGGUUgUGuGGGuGGGGAGGGGAGc -3'
miRNA:   3'- -ACCCCCAA-AC-CCCcUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 7498 0.78 0.176338
Target:  5'- gGGGGGgacggUGGGccggagcgaaaGGAGGGAGGGGggGc -3'
miRNA:   3'- aCCCCCaa---ACCC-----------CCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 150399 0.78 0.176338
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGu- -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 155714 0.78 0.189995
Target:  5'- gUGGGGGag-GGGGGuGGggGGuGGggGg -3'
miRNA:   3'- -ACCCCCaaaCCCCCuCCuuCC-CCuuU- -5'
21559 5' -59.1 NC_004812.1 + 156205 0.78 0.19475
Target:  5'- aGGGGGccgcUGGGGaGAGGGacggGGGGGAGAg -3'
miRNA:   3'- aCCCCCaa--ACCCC-CUCCU----UCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 116263 0.77 0.204572
Target:  5'- aGGGGGgc-GGGGGuAGGGgcGGGGGggGa -3'
miRNA:   3'- aCCCCCaaaCCCCC-UCCU--UCCCCuuU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.