Results 121 - 140 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 57250 | 0.79 | 0.163562 |
Target: 5'- gUGGGcGGgcgcUGGGGGGGGggGGGGcGAc -3' miRNA: 3'- -ACCC-CCaa--ACCCCCUCCuuCCCCuUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 140783 | 0.79 | 0.166885 |
Target: 5'- gUGGGGGUgcgauguggucGGGGGAGGGgauGGGGAGg -3' miRNA: 3'- -ACCCCCAaa---------CCCCCUCCUu--CCCCUUu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 70884 | 0.79 | 0.167726 |
Target: 5'- cGGGGGgg-GcGGGGAGGggGcGGGGAu -3' miRNA: 3'- aCCCCCaaaC-CCCCUCCuuC-CCCUUu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 146642 | 0.78 | 0.171984 |
Target: 5'- cUGGGGGUUgUGuGGGuGGGGAGGGGAGc -3' miRNA: 3'- -ACCCCCAA-AC-CCCcUCCUUCCCCUUu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 7498 | 0.78 | 0.176338 |
Target: 5'- gGGGGGgacggUGGGccggagcgaaaGGAGGGAGGGGggGc -3' miRNA: 3'- aCCCCCaa---ACCC-----------CCUCCUUCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 150399 | 0.78 | 0.176338 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGu- -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 155714 | 0.78 | 0.189995 |
Target: 5'- gUGGGGGag-GGGGGuGGggGGuGGggGg -3' miRNA: 3'- -ACCCCCaaaCCCCCuCCuuCC-CCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 127483 | 0.76 | 0.24823 |
Target: 5'- cGGGGGgaggGGGGGAGGGguGGGcGGGu- -3' miRNA: 3'- aCCCCCaaa-CCCCCUCCU--UCC-CCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 72335 | 0.76 | 0.231017 |
Target: 5'- cGGGcGGgccgcggGGGGGAGGggGGGcGggGg -3' miRNA: 3'- aCCC-CCaaa----CCCCCUCCuuCCC-CuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 156321 | 0.77 | 0.209642 |
Target: 5'- cGGGGGacgggagGGGGccGAGGggGGGGggGg -3' miRNA: 3'- aCCCCCaaa----CCCC--CUCCuuCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 154776 | 0.77 | 0.204572 |
Target: 5'- cGGGGaga--GGGGAGGAGGGGGGAGg -3' miRNA: 3'- aCCCCcaaacCCCCUCCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 116263 | 0.77 | 0.204572 |
Target: 5'- aGGGGGgc-GGGGGuAGGGgcGGGGGggGa -3' miRNA: 3'- aCCCCCaaaCCCCC-UCCU--UCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 156205 | 0.78 | 0.19475 |
Target: 5'- aGGGGGccgcUGGGGaGAGGGacggGGGGGAGAg -3' miRNA: 3'- aCCCCCaa--ACCCC-CUCCU----UCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 153452 | 0.82 | 0.095281 |
Target: 5'- cGGGGGgcgcggGGGGGGGcGGAGGGGAGc -3' miRNA: 3'- aCCCCCaaa---CCCCCUC-CUUCCCCUUu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24130 | 0.84 | 0.073196 |
Target: 5'- aUGGGGGcggGGGuGGGGGAAGGGGggGc -3' miRNA: 3'- -ACCCCCaaaCCC-CCUCCUUCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 37509 | 0.84 | 0.073196 |
Target: 5'- cGGGGGUgggUGGGuGGGGuGggGGGGAAAa -3' miRNA: 3'- aCCCCCAa--ACCC-CCUC-CuuCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 99836 | 0.85 | 0.060754 |
Target: 5'- cGGGGaGgg-GGGGGAGGAGGGGGAc- -3' miRNA: 3'- aCCCC-CaaaCCCCCUCCUUCCCCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 6130 | 0.87 | 0.042861 |
Target: 5'- aGGGGGa--GGGGGAGGggGGGGggGu -3' miRNA: 3'- aCCCCCaaaCCCCCUCCuuCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 30847 | 0.91 | 0.024929 |
Target: 5'- gGGGGGgggGGGGGGGGggGGGGAGGa -3' miRNA: 3'- aCCCCCaaaCCCCCUCCuuCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 30660 | 0.66 | 0.774794 |
Target: 5'- cGcGGGaccGGGGccgcgcGAGGAAGGGGAGGg -3' miRNA: 3'- aCcCCCaaaCCCC------CUCCUUCCCCUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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