Results 21 - 40 of 260 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 24696 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 24579 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 40662 | 0.81 | 0.108565 |
Target: 5'- aGGGGGgcgcGGGGGAgGGGAGGGGGGc -3' miRNA: 3'- aCCCCCaaa-CCCCCU-CCUUCCCCUUu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 99836 | 0.85 | 0.060754 |
Target: 5'- cGGGGaGgg-GGGGGAGGAGGGGGAc- -3' miRNA: 3'- aCCCC-CaaaCCCCCUCCUUCCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 34001 | 0.79 | 0.155513 |
Target: 5'- gUGGGGGg--GaGGGGAGGggGaGGGAGu -3' miRNA: 3'- -ACCCCCaaaC-CCCCUCCuuC-CCCUUu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 40525 | 0.81 | 0.123571 |
Target: 5'- aGGGGGgcgcGGGGGAGGGgAGGGGGc- -3' miRNA: 3'- aCCCCCaaa-CCCCCUCCU-UCCCCUuu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 24501 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 6130 | 0.87 | 0.042861 |
Target: 5'- aGGGGGa--GGGGGAGGggGGGGggGu -3' miRNA: 3'- aCCCCCaaaCCCCCUCCuuCCCCuuU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 24852 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 30847 | 0.91 | 0.024929 |
Target: 5'- gGGGGGgggGGGGGGGGggGGGGAGGa -3' miRNA: 3'- aCCCCCaaaCCCCCUCCuuCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 24540 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 24735 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 24384 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 37868 | 0.81 | 0.108565 |
Target: 5'- gUGGGcaaGGg--GGGGGGGGggGGGGAAAg -3' miRNA: 3'- -ACCC---CCaaaCCCCCUCCuuCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 6078 | 0.82 | 0.097808 |
Target: 5'- cGGGGGg-UGGGaaGGAGGGAGGGGAGGg -3' miRNA: 3'- aCCCCCaaACCC--CCUCCUUCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 37509 | 0.84 | 0.073196 |
Target: 5'- cGGGGGUgggUGGGuGGGGuGggGGGGAAAa -3' miRNA: 3'- aCCCCCAa--ACCC-CCUC-CuuCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 30206 | 0.78 | 0.189995 |
Target: 5'- gUGGGGGag-GGGGGuGGggGGuGGggGg -3' miRNA: 3'- -ACCCCCaaaCCCCCuCCuuCC-CCuuU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 29444 | 0.79 | 0.159492 |
Target: 5'- cGGGG----GGGGGGGGAGGGGGGAc -3' miRNA: 3'- aCCCCcaaaCCCCCUCCUUCCCCUUu -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 37550 | 0.8 | 0.144111 |
Target: 5'- aGGGGGU--GGGGGAGauGGGGGAGAg -3' miRNA: 3'- aCCCCCAaaCCCCCUCcuUCCCCUUU- -5' |
|||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 40564 | 0.81 | 0.123571 |
Target: 5'- aGGGGGgcgcGGGGGAGGGgAGGGGGc- -3' miRNA: 3'- aCCCCCaaa-CCCCCUCCU-UCCCCUuu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home