miRNA display CGI


Results 41 - 60 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 30039 0.79 0.155513
Target:  5'- aGGGcGGgagGGGcGGGGGAGGGGGGAGg -3'
miRNA:   3'- aCCC-CCaaaCCC-CCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24501 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 6130 0.87 0.042861
Target:  5'- aGGGGGa--GGGGGAGGggGGGGggGu -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 30748 0.8 0.144111
Target:  5'- aGGGGGacgggaGGGGGAcGGGAGGGGGAc -3'
miRNA:   3'- aCCCCCaaa---CCCCCU-CCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 30847 0.91 0.024929
Target:  5'- gGGGGGgggGGGGGGGGggGGGGAGGa -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 17325 0.74 0.311168
Target:  5'- cGGGGGUgguggUGGGGGcgggggugguggugGGGgcGGGGGu- -3'
miRNA:   3'- aCCCCCAa----ACCCCC--------------UCCuuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 37509 0.84 0.073196
Target:  5'- cGGGGGUgggUGGGuGGGGuGggGGGGAAAa -3'
miRNA:   3'- aCCCCCAa--ACCC-CCUC-CuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 59626 0.75 0.285823
Target:  5'- gUGGGGGUggGGcGGGAGcGGccgcGGGGGAu- -3'
miRNA:   3'- -ACCCCCAaaCC-CCCUC-CU----UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 99097 0.75 0.279259
Target:  5'- aGGGGGgcggggugUUGGGGGAGaGGGagaacgcuGGGGAGAa -3'
miRNA:   3'- aCCCCCa-------AACCCCCUC-CUU--------CCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 61264 0.76 0.23664
Target:  5'- cGGGGGc---GGGGAGGggGGGGu-- -3'
miRNA:   3'- aCCCCCaaacCCCCUCCuuCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 29268 0.77 0.204572
Target:  5'- cGGGGaga--GGGGAGGAGGGGGGAGg -3'
miRNA:   3'- aCCCCcaaacCCCCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 30206 0.78 0.189995
Target:  5'- gUGGGGGag-GGGGGuGGggGGuGGggGg -3'
miRNA:   3'- -ACCCCCaaaCCCCCuCCuuCC-CCuuU- -5'
21559 5' -59.1 NC_004812.1 + 29444 0.79 0.159492
Target:  5'- cGGGG----GGGGGGGGAGGGGGGAc -3'
miRNA:   3'- aCCCCcaaaCCCCCUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 40702 0.81 0.123571
Target:  5'- aGGGGGgcgcGGGGGAGGGgAGGGGGc- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCU-UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 24852 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24696 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24579 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24384 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 37868 0.81 0.108565
Target:  5'- gUGGGcaaGGg--GGGGGGGGggGGGGAAAg -3'
miRNA:   3'- -ACCC---CCaaaCCCCCUCCuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 6078 0.82 0.097808
Target:  5'- cGGGGGg-UGGGaaGGAGGGAGGGGAGGg -3'
miRNA:   3'- aCCCCCaaACCC--CCUCCUUCCCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.