miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 29444 0.79 0.159492
Target:  5'- cGGGG----GGGGGGGGAGGGGGGAc -3'
miRNA:   3'- aCCCCcaaaCCCCCUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 16711 0.77 0.199608
Target:  5'- gGGGGGUgUGGGGGGGuuccguAGGGGAu- -3'
miRNA:   3'- aCCCCCAaACCCCCUCcu----UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 24130 0.84 0.073196
Target:  5'- aUGGGGGcggGGGuGGGGGAAGGGGggGc -3'
miRNA:   3'- -ACCCCCaaaCCC-CCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 59003 0.82 0.100399
Target:  5'- cGGGGGaggGGGaaGGGGGAAGGGGAGAa -3'
miRNA:   3'- aCCCCCaaaCCC--CCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24306 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24423 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24618 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24735 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 40525 0.81 0.123571
Target:  5'- aGGGGGgcgcGGGGGAGGGgAGGGGGc- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCU-UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 40741 0.8 0.126795
Target:  5'- aGGGGGcgcGGGGGAgGGGAGGGGGGc -3'
miRNA:   3'- aCCCCCaaaCCCCCU-CCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 31819 0.71 0.469778
Target:  5'- cGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3'
miRNA:   3'- aCCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 31766 0.71 0.451428
Target:  5'- cUGGGGGUccUGGGGGuccGGGGucgccGGGGGu- -3'
miRNA:   3'- -ACCCCCAa-ACCCCC---UCCUu----CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 100864 0.77 0.209642
Target:  5'- cGGGGccgcGGGGGAGGcGGGGGAGGg -3'
miRNA:   3'- aCCCCcaaaCCCCCUCCuUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 127004 0.75 0.266491
Target:  5'- aGGuGGGguaGGGcGGGGGggGGGGAGc -3'
miRNA:   3'- aCC-CCCaaaCCC-CCUCCuuCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 59626 0.75 0.285823
Target:  5'- gUGGGGGUggGGcGGGAGcGGccgcGGGGGAu- -3'
miRNA:   3'- -ACCCCCAaaCC-CCCUC-CU----UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 17325 0.74 0.311168
Target:  5'- cGGGGGUgguggUGGGGGcgggggugguggugGGGgcGGGGGu- -3'
miRNA:   3'- aCCCCCAa----ACCCCC--------------UCCuuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 22965 0.74 0.327765
Target:  5'- cGaGGGGUgcgcGGGGGAGGgGAGGGcGAGGg -3'
miRNA:   3'- aC-CCCCAaa--CCCCCUCC-UUCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 23121 0.74 0.327765
Target:  5'- cGaGGGGUgcgcGGGGGAGGgGAGGGcGAGGg -3'
miRNA:   3'- aC-CCCCAaa--CCCCCUCC-UUCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 10095 0.73 0.350385
Target:  5'- gUGGGGGUcgcugUGGGGGugagaggugAGGAAGGGaAAAg -3'
miRNA:   3'- -ACCCCCAa----ACCCCC---------UCCUUCCCcUUU- -5'
21559 5' -59.1 NC_004812.1 + 126965 0.73 0.377335
Target:  5'- cGGGGGagagaagggaugGGGaGGGGGAGGaGGGAGAg -3'
miRNA:   3'- aCCCCCaaa---------CCC-CCUCCUUC-CCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.