miRNA display CGI


Results 81 - 100 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 10387 0.76 0.254199
Target:  5'- cGGGGGUcUGGGccggcGGGGuGAGGGGGAu- -3'
miRNA:   3'- aCCCCCAaACCC-----CCUC-CUUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 149470 0.75 0.279259
Target:  5'- aGGGGGg--GGGGGGGGuggguGGGuGAGAg -3'
miRNA:   3'- aCCCCCaaaCCCCCUCCuu---CCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 29533 0.75 0.288483
Target:  5'- gGGGGGgacccgGGcggcucgcgcgcguaGGGGGGAAGGGGggGg -3'
miRNA:   3'- aCCCCCaaa---CC---------------CCCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 37431 0.74 0.32047
Target:  5'- aGGGGGg--GGcGGGGGGccGAGGGGGc- -3'
miRNA:   3'- aCCCCCaaaCC-CCCUCC--UUCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 23017 0.74 0.327765
Target:  5'- cGaGGGGUgcgcGGGGGAGGgGAGGGcGAGGg -3'
miRNA:   3'- aC-CCCCAaa--CCCCCUCC-UUCCC-CUUU- -5'
21559 5' -59.1 NC_004812.1 + 10095 0.73 0.350385
Target:  5'- gUGGGGGUcgcugUGGGGGugagaggugAGGAAGGGaAAAg -3'
miRNA:   3'- -ACCCCCAa----ACCCCC---------UCCUUCCCcUUU- -5'
21559 5' -59.1 NC_004812.1 + 126965 0.73 0.377335
Target:  5'- cGGGGGagagaagggaugGGGaGGGGGAGGaGGGAGAg -3'
miRNA:   3'- aCCCCCaaa---------CCC-CCUCCUUC-CCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 40741 0.8 0.126795
Target:  5'- aGGGGGcgcGGGGGAgGGGAGGGGGGc -3'
miRNA:   3'- aCCCCCaaaCCCCCU-CCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 40525 0.81 0.123571
Target:  5'- aGGGGGgcgcGGGGGAGGGgAGGGGGc- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCU-UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 24735 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 36585 0.7 0.495135
Target:  5'- cGGGGGgccGGGGGucucccagggccacGGGggGGcGGggGu -3'
miRNA:   3'- aCCCCCaaaCCCCC--------------UCCuuCC-CCuuU- -5'
21559 5' -59.1 NC_004812.1 + 49621 0.7 0.526939
Target:  5'- aGGGGcGcccgcGGGGcGGGAGGGGGAGg -3'
miRNA:   3'- aCCCC-Caaa--CCCCcUCCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 146003 0.69 0.566454
Target:  5'- cGGGGGUgcgGcucuaacgacGGGGAGGAAGaGGcGggGg -3'
miRNA:   3'- aCCCCCAaa-C----------CCCCUCCUUC-CC-CuuU- -5'
21559 5' -59.1 NC_004812.1 + 17923 0.69 0.596584
Target:  5'- cGGGcgcgaggcccGGUcgGGGGGGGaGAGGGGGu-- -3'
miRNA:   3'- aCCC----------CCAaaCCCCCUC-CUUCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 132265 0.68 0.626942
Target:  5'- cUGGGGGcgagggugugUGGuGGuGGGGggGGGGuAAGa -3'
miRNA:   3'- -ACCCCCaa--------ACC-CC-CUCCuuCCCC-UUU- -5'
21559 5' -59.1 NC_004812.1 + 24130 0.84 0.073196
Target:  5'- aUGGGGGcggGGGuGGGGGAAGGGGggGc -3'
miRNA:   3'- -ACCCCCaaaCCC-CCUCCUUCCCCuuU- -5'
21559 5' -59.1 NC_004812.1 + 59003 0.82 0.100399
Target:  5'- cGGGGGaggGGGaaGGGGGAAGGGGAGAa -3'
miRNA:   3'- aCCCCCaaaCCC--CCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24306 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24423 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 24618 0.81 0.111423
Target:  5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3'
miRNA:   3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.