Results 101 - 120 of 260 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21559 | 5' | -59.1 | NC_004812.1 | + | 13392 | 0.69 | 0.586506 |
Target: 5'- cGGGGGUcgGGGGcGcGGcGGGGGu-- -3' miRNA: 3'- aCCCCCAaaCCCC-CuCCuUCCCCuuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 33141 | 0.68 | 0.637079 |
Target: 5'- gUGGGGGUcucGGGGGucucGGGGGucucGGGGGu- -3' miRNA: 3'- -ACCCCCAaa-CCCCC----UCCUU----CCCCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 36019 | 0.68 | 0.6462 |
Target: 5'- -uGGGGUccGGGGGGcgggcgcGGAGGcGGGAGGg -3' miRNA: 3'- acCCCCAaaCCCCCU-------CCUUC-CCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 91121 | 0.67 | 0.67751 |
Target: 5'- cGuGGGGUcgcUUGGGGGcGGGGccggucGGGGAc- -3' miRNA: 3'- aC-CCCCA---AACCCCCuCCUU------CCCCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 2053 | 0.67 | 0.687547 |
Target: 5'- cGGGGGgcgcGGGGGAGGggGc----- -3' miRNA: 3'- aCCCCCaaa-CCCCCUCCuuCcccuuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 37431 | 0.74 | 0.32047 |
Target: 5'- aGGGGGg--GGcGGGGGGccGAGGGGGc- -3' miRNA: 3'- aCCCCCaaaCC-CCCUCC--UUCCCCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 29533 | 0.75 | 0.288483 |
Target: 5'- gGGGGGgacccgGGcggcucgcgcgcguaGGGGGGAAGGGGggGg -3' miRNA: 3'- aCCCCCaaa---CC---------------CCCUCCUUCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24130 | 0.84 | 0.073196 |
Target: 5'- aUGGGGGcggGGGuGGGGGAAGGGGggGc -3' miRNA: 3'- -ACCCCCaaaCCC-CCUCCUUCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 59003 | 0.82 | 0.100399 |
Target: 5'- cGGGGGaggGGGaaGGGGGAAGGGGAGAa -3' miRNA: 3'- aCCCCCaaaCCC--CCUCCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24306 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24423 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24618 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 24735 | 0.81 | 0.111423 |
Target: 5'- aGGGGGgaagggaagGGGGGAagGGAAGGGGGGAa -3' miRNA: 3'- aCCCCCaaa------CCCCCU--CCUUCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 40525 | 0.81 | 0.123571 |
Target: 5'- aGGGGGgcgcGGGGGAGGGgAGGGGGc- -3' miRNA: 3'- aCCCCCaaa-CCCCCUCCU-UCCCCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 40741 | 0.8 | 0.126795 |
Target: 5'- aGGGGGcgcGGGGGAgGGGAGGGGGGc -3' miRNA: 3'- aCCCCCaaaCCCCCU-CCUUCCCCUUu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 38399 | 0.78 | 0.176338 |
Target: 5'- gGGGGGgacggUGGGccggagcgaaaGGAGGGAGGGGggGc -3' miRNA: 3'- aCCCCCaa---ACCC-----------CCUCCUUCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 30697 | 0.78 | 0.19475 |
Target: 5'- aGGGGGccgcUGGGGaGAGGGacggGGGGGAGAg -3' miRNA: 3'- aCCCCCaa--ACCCC-CUCCU----UCCCCUUU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 30813 | 0.77 | 0.209642 |
Target: 5'- cGGGGGacgggagGGGGccGAGGggGGGGggGg -3' miRNA: 3'- aCCCCCaaa----CCCC--CUCCuuCCCCuuU- -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 10387 | 0.76 | 0.254199 |
Target: 5'- cGGGGGUcUGGGccggcGGGGuGAGGGGGAu- -3' miRNA: 3'- aCCCCCAaACCC-----CCUC-CUUCCCCUuu -5' |
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21559 | 5' | -59.1 | NC_004812.1 | + | 149470 | 0.75 | 0.279259 |
Target: 5'- aGGGGGg--GGGGGGGGuggguGGGuGAGAg -3' miRNA: 3'- aCCCCCaaaCCCCCUCCuu---CCC-CUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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