miRNA display CGI


Results 21 - 40 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21559 5' -59.1 NC_004812.1 + 132313 0.66 0.733974
Target:  5'- gGuGGGGUUgGGcGGGAcGGAAacucaacagcggccGGGGAGAg -3'
miRNA:   3'- aC-CCCCAAaCC-CCCU-CCUU--------------CCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 36173 0.66 0.733003
Target:  5'- aGGGGcacggaggcgGGGGGAGGcccGGGaGGAGAa -3'
miRNA:   3'- aCCCCcaaa------CCCCCUCCu--UCC-CCUUU- -5'
21559 5' -59.1 NC_004812.1 + 5272 0.66 0.733003
Target:  5'- aGGGGcacggaggcgGGGGGAGGcccGGGaGGAGAa -3'
miRNA:   3'- aCCCCcaaa------CCCCCUCCu--UCC-CCUUU- -5'
21559 5' -59.1 NC_004812.1 + 9637 0.67 0.731058
Target:  5'- cGuGGGUgcgucGGGGGAaacucagcgccaccgGGGAGGGGGAc -3'
miRNA:   3'- aCcCCCAaa---CCCCCU---------------CCUUCCCCUUu -5'
21559 5' -59.1 NC_004812.1 + 61205 0.67 0.727158
Target:  5'- cGGGGGaacgaUGGGcGGGGGGgcuGGGGu-- -3'
miRNA:   3'- aCCCCCaa---ACCC-CCUCCUu--CCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 106758 0.67 0.727158
Target:  5'- cGGGGGg--GucGGAGGAGGGGcGGc- -3'
miRNA:   3'- aCCCCCaaaCccCCUCCUUCCC-CUuu -5'
21559 5' -59.1 NC_004812.1 + 36982 0.67 0.725204
Target:  5'- aGGGGGgcgaggggaaGGGGGucggcGGGAAcGGGGGc- -3'
miRNA:   3'- aCCCCCaaa-------CCCCC-----UCCUU-CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 6081 0.67 0.725204
Target:  5'- aGGGGGgcgaggggaaGGGGGucggcGGGAAcGGGGGc- -3'
miRNA:   3'- aCCCCCaaa-------CCCCC-----UCCUU-CCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 70372 0.67 0.717354
Target:  5'- gGuGGGGUauUUGGGGGucguGGAuuGGGGu-- -3'
miRNA:   3'- aC-CCCCA--AACCCCCu---CCUu-CCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 7546 0.67 0.717354
Target:  5'- cGcGGGGac-GGGGGAGcgcGGGGAGAc -3'
miRNA:   3'- aC-CCCCaaaCCCCCUCcuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 38447 0.67 0.717354
Target:  5'- cGcGGGGac-GGGGGAGcgcGGGGAGAc -3'
miRNA:   3'- aC-CCCCaaaCCCCCUCcuuCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 102262 0.67 0.707478
Target:  5'- -uGGGGUc--GGcGAGGAGGGGGGAGg -3'
miRNA:   3'- acCCCCAaacCCcCUCCUUCCCCUUU- -5'
21559 5' -59.1 NC_004812.1 + 35532 0.67 0.704503
Target:  5'- aGGGGcGg--GGGGGcgggacgcccgcgcGGGGAGGGGc-- -3'
miRNA:   3'- aCCCC-CaaaCCCCC--------------UCCUUCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 4631 0.67 0.704503
Target:  5'- aGGGGcGg--GGGGGcgggacgcccgcgcGGGGAGGGGc-- -3'
miRNA:   3'- aCCCC-CaaaCCCCC--------------UCCUUCCCCuuu -5'
21559 5' -59.1 NC_004812.1 + 66359 0.67 0.687547
Target:  5'- aGGGGGaagcUGGGaGcGGGGgcGGGGGc- -3'
miRNA:   3'- aCCCCCaa--ACCC-C-CUCCuuCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 2053 0.67 0.687547
Target:  5'- cGGGGGgcgcGGGGGAGGggGc----- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCuuCcccuuu -5'
21559 5' -59.1 NC_004812.1 + 37225 0.67 0.687547
Target:  5'- cGGGGGgccccGGGcaGGAGGGgcagcAGGGGGc- -3'
miRNA:   3'- aCCCCCaaa--CCC--CCUCCU-----UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 127562 0.67 0.687547
Target:  5'- cGGGGGgcgcGGGGGAGGggGc----- -3'
miRNA:   3'- aCCCCCaaa-CCCCCUCCuuCcccuuu -5'
21559 5' -59.1 NC_004812.1 + 6324 0.67 0.687547
Target:  5'- cGGGGGgccccGGGcaGGAGGGgcagcAGGGGGc- -3'
miRNA:   3'- aCCCCCaaa--CCC--CCUCCU-----UCCCCUuu -5'
21559 5' -59.1 NC_004812.1 + 91121 0.67 0.67751
Target:  5'- cGuGGGGUcgcUUGGGGGcGGGGccggucGGGGAc- -3'
miRNA:   3'- aC-CCCCA---AACCCCCuCCUU------CCCCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.