miRNA display CGI

Results 1 - 20 of 1263 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21560	3'	-69.6	NC_004812.1	+	121187	0.66	0.372382
	Target:  5'- gGCCGCCcagcagcgcGCCCuggucgaacagcaugCCGCCCaCCGGGGUc- -3' miRNA:   3'- -UGGCGG---------CGGG---------------GGCGGGcGGCCUCGcg -5'
21560	3'	-69.6	NC_004812.1	+	152088	0.66	0.372382
	Target:  5'- gGCCGCCcagcagcgcGCCCuggucgaacagcaugCCGCCCaCCGGGGUc- -3' miRNA:   3'- -UGGCGG---------CGGG---------------GGCGGGcGGCCUCGcg -5'
21560	3'	-69.6	NC_004812.1	+	57831	0.66	0.370167
	Target:  5'- cCCGUCGCCCCacuacgaggccucgcUGCgccuccugucgucgCCGCCGGGggccugcccccGCGCg -3' miRNA:   3'- uGGCGGCGGGG---------------GCG--------------GGCGGCCU-----------CGCG- -5'
21560	3'	-69.6	NC_004812.1	+	55448	0.66	0.369431
	Target:  5'- gGCCGCCGCCuUCCGCa-GCUcccugGGAuCGCu -3' miRNA:   3'- -UGGCGGCGG-GGGCGggCGG-----CCUcGCG- -5'
21560	3'	-69.6	NC_004812.1	+	115475	0.66	0.369431
	Target:  5'- cGCCGCgCGCgUgCgGCCgCGCCGG-GCGg -3' miRNA:   3'- -UGGCG-GCG-GgGgCGG-GCGGCCuCGCg -5'
21560	3'	-69.6	NC_004812.1	+	90879	0.66	0.369431
	Target:  5'- gAUCGCCGUCUCC-UCC-UCGGGGUGCc -3' miRNA:   3'- -UGGCGGCGGGGGcGGGcGGCCUCGCG- -5'
21560	3'	-69.6	NC_004812.1	+	117800	0.66	0.369431
	Target:  5'- cGCCGCaGCCCCCGacaCCUGC-GG-GCGa -3' miRNA:   3'- -UGGCGgCGGGGGC---GGGCGgCCuCGCg -5'
21560	3'	-69.6	NC_004812.1	+	70956	0.66	0.369431
	Target:  5'- uACUGCgGCgCCUCGaCCUGCCcgGGAGaGCa -3' miRNA:   3'- -UGGCGgCG-GGGGC-GGGCGG--CCUCgCG- -5'
21560	3'	-69.6	NC_004812.1	+	57746	0.66	0.369431
	Target:  5'- cGCCGUCGagCUggGCCCGgaUGGAGCGCa -3' miRNA:   3'- -UGGCGGCg-GGggCGGGCg-GCCUCGCG- -5'
21560	3'	-69.6	NC_004812.1	+	144317	0.66	0.369431
	Target:  5'- gGCCGUCGUggguuucgCUCCGCCCccCCGGgcaGGUGCu -3' miRNA:   3'- -UGGCGGCG--------GGGGCGGGc-GGCC---UCGCG- -5'
21560	3'	-69.6	NC_004812.1	+	18646	0.66	0.369431
	Target:  5'- gACC-CCGCCCcgacgaggggCCGCCgCGCCGGgaaaGGC-Cg -3' miRNA:   3'- -UGGcGGCGGG----------GGCGG-GCGGCC----UCGcG- -5'
21560	3'	-69.6	NC_004812.1	+	20077	0.66	0.369431
	Target:  5'- cGCgCGCCaGCCagcggaCGCCuCGgaGGAGCGCg -3' miRNA:   3'- -UG-GCGG-CGGgg----GCGG-GCggCCUCGCG- -5'
21560	3'	-69.6	NC_004812.1	+	51548	0.66	0.369431
	Target:  5'- gACCccagGCCGUCCCggcgagcgcaCGCgCaGCCGGAgGCGCc -3' miRNA:   3'- -UGG----CGGCGGGG----------GCGgG-CGGCCU-CGCG- -5'
21560	3'	-69.6	NC_004812.1	+	128822	0.66	0.369431
	Target:  5'- gGCC-CCGCCCUCuCCC-CCGGcGgGCu -3' miRNA:   3'- -UGGcGGCGGGGGcGGGcGGCCuCgCG- -5'
21560	3'	-69.6	NC_004812.1	+	109500	0.66	0.369431
	Target:  5'- gGCUGCUGCgUCUCGCCgCGaCGGAGC-Cg -3' miRNA:   3'- -UGGCGGCG-GGGGCGG-GCgGCCUCGcG- -5'
21560	3'	-69.6	NC_004812.1	+	105053	0.66	0.369431
	Target:  5'- -gCGCCGCUCCgG-CCGC-GG-GCGCa -3' miRNA:   3'- ugGCGGCGGGGgCgGGCGgCCuCGCG- -5'
21560	3'	-69.6	NC_004812.1	+	32274	0.66	0.369431
	Target:  5'- uCCGCggCGUCCCCcCCCgggGCCGuGAGCuGCu -3' miRNA:   3'- uGGCG--GCGGGGGcGGG---CGGC-CUCG-CG- -5'
21560	3'	-69.6	NC_004812.1	+	50453	0.66	0.369431
	Target:  5'- gGCCGCCGaggccgagCUCgGCCuCGgCGG-GCGCg -3' miRNA:   3'- -UGGCGGCg-------GGGgCGG-GCgGCCuCGCG- -5'
21560	3'	-69.6	NC_004812.1	+	40904	0.66	0.369431
	Target:  5'- uGCCG-UGUCCCCaugcccuggGCUCGCCucGGGCGCg -3' miRNA:   3'- -UGGCgGCGGGGG---------CGGGCGGc-CUCGCG- -5'
21560	3'	-69.6	NC_004812.1	+	35724	0.66	0.368696
	Target:  5'- gACCcCCGCgucuccgCCCCGcCCCGCUacAGCGCc -3' miRNA:   3'- -UGGcGGCG-------GGGGC-GGGCGGccUCGCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home