miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21560 5' -55.2 NC_004812.1 + 106563 0.66 0.950134
Target:  5'- cGGUGguccacguuaauCGCCAGGGGgcccgcGGGGGg-GAGCg -3'
miRNA:   3'- cCCAU------------GCGGUCUCCa-----CCUCUagCUCG- -5'
21560 5' -55.2 NC_004812.1 + 82783 0.66 0.950134
Target:  5'- cGGGUGcCGCUGGgacgagcugGGGUGGgAGcgCGGGg -3'
miRNA:   3'- -CCCAU-GCGGUC---------UCCACC-UCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 31480 0.66 0.950134
Target:  5'- uGGGUgAUGCgGGGGGcccccUGGAGggCG-GCu -3'
miRNA:   3'- -CCCA-UGCGgUCUCC-----ACCUCuaGCuCG- -5'
21560 5' -55.2 NC_004812.1 + 155537 0.66 0.950134
Target:  5'- aGGUAC-CCAgGAGGgcgGGAGGggCGGGg -3'
miRNA:   3'- cCCAUGcGGU-CUCCa--CCUCUa-GCUCg -5'
21560 5' -55.2 NC_004812.1 + 155290 0.66 0.950134
Target:  5'- aGGGgcgggGCGCgGcGGGGcccGGGGGUCG-GCg -3'
miRNA:   3'- -CCCa----UGCGgU-CUCCa--CCUCUAGCuCG- -5'
21560 5' -55.2 NC_004812.1 + 114985 0.66 0.950134
Target:  5'- cGGcgcugACGUCAG-GGUGGAGGaggcagacgcugUCGAGg -3'
miRNA:   3'- cCCa----UGCGGUCuCCACCUCU------------AGCUCg -5'
21560 5' -55.2 NC_004812.1 + 44113 0.66 0.950134
Target:  5'- aGGGccCGCCuGAcGGccGGGGcGUCGAGCc -3'
miRNA:   3'- -CCCauGCGGuCU-CCa-CCUC-UAGCUCG- -5'
21560 5' -55.2 NC_004812.1 + 30028 0.66 0.950134
Target:  5'- aGGUAC-CCAgGAGGgcgGGAGGggCGGGg -3'
miRNA:   3'- cCCAUGcGGU-CUCCa--CCUCUa-GCUCg -5'
21560 5' -55.2 NC_004812.1 + 94688 0.66 0.950134
Target:  5'- cGGGUGCGU---GGGUGGGG--CGAGg -3'
miRNA:   3'- -CCCAUGCGgucUCCACCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 29782 0.66 0.950134
Target:  5'- aGGGgcgggGCGCgGcGGGGcccGGGGGUCG-GCg -3'
miRNA:   3'- -CCCa----UGCGgU-CUCCa--CCUCUAGCuCG- -5'
21560 5' -55.2 NC_004812.1 + 5872 0.66 0.945888
Target:  5'- uGGGcGCggGCCGGGGGgcgcGGGcgCGGGCu -3'
miRNA:   3'- -CCCaUG--CGGUCUCCac--CUCuaGCUCG- -5'
21560 5' -55.2 NC_004812.1 + 100898 0.66 0.945888
Target:  5'- gGGGUGCGCCgAGcgcGGGUGcAGG-CGcGCg -3'
miRNA:   3'- -CCCAUGCGG-UC---UCCACcUCUaGCuCG- -5'
21560 5' -55.2 NC_004812.1 + 146955 0.66 0.945888
Target:  5'- uGGGUcCGuCCGGgcgGGGUGG-GAgUGGGCg -3'
miRNA:   3'- -CCCAuGC-GGUC---UCCACCuCUaGCUCG- -5'
21560 5' -55.2 NC_004812.1 + 78554 0.66 0.945888
Target:  5'- aGGGgGCuCCGGGGGcUGGcGAucccgcagcgcgUCGAGCg -3'
miRNA:   3'- -CCCaUGcGGUCUCC-ACCuCU------------AGCUCG- -5'
21560 5' -55.2 NC_004812.1 + 55299 0.66 0.945888
Target:  5'- ---cACGCC-GAGGUGGgcucGGcgCGGGCc -3'
miRNA:   3'- cccaUGCGGuCUCCACC----UCuaGCUCG- -5'
21560 5' -55.2 NC_004812.1 + 36773 0.66 0.945888
Target:  5'- uGGGcGCggGCCGGGGGgcgcGGGcgCGGGCu -3'
miRNA:   3'- -CCCaUG--CGGUCUCCac--CUCuaGCUCG- -5'
21560 5' -55.2 NC_004812.1 + 95545 0.66 0.945888
Target:  5'- cGGGgcgucGCGCCcc-GGcGG-GGUCGAGCg -3'
miRNA:   3'- -CCCa----UGCGGucuCCaCCuCUAGCUCG- -5'
21560 5' -55.2 NC_004812.1 + 128950 0.66 0.945888
Target:  5'- ---gGCGCCAGccGccgcGGGGGUCGGGCc -3'
miRNA:   3'- cccaUGCGGUCucCa---CCUCUAGCUCG- -5'
21560 5' -55.2 NC_004812.1 + 3442 0.66 0.945888
Target:  5'- ---gGCGCCAGccGccgcGGGGGUCGGGCc -3'
miRNA:   3'- cccaUGCGGUCucCa---CCUCUAGCUCG- -5'
21560 5' -55.2 NC_004812.1 + 54774 0.66 0.945888
Target:  5'- cGGGcgGCuaCGGGGGcGGcuGGUCGGGCc -3'
miRNA:   3'- -CCCa-UGcgGUCUCCaCCu-CUAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.