miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21560 5' -55.2 NC_004812.1 + 148788 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 148555 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 148581 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 148607 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 148633 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 148659 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 148710 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 148736 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 148762 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 148529 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 148503 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 148477 0.76 0.453204
Target:  5'- gGGGUGCGCgggGGAGG-GGAGggCGAGg -3'
miRNA:   3'- -CCCAUGCGg--UCUCCaCCUCuaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 79008 0.92 0.053075
Target:  5'- gGGGUGCGCCGGGGGuUGGGGGUCG-GCu -3'
miRNA:   3'- -CCCAUGCGGUCUCC-ACCUCUAGCuCG- -5'
21560 5' -55.2 NC_004812.1 + 78954 0.88 0.100445
Target:  5'- gGGGUGCGCCGGGGGUcgggggugcgccGGGGGUCGGGg -3'
miRNA:   3'- -CCCAUGCGGUCUCCA------------CCUCUAGCUCg -5'
21560 5' -55.2 NC_004812.1 + 151931 0.8 0.267291
Target:  5'- gGGGcGCGCCGGAGGUGGAcGAggcgCGccGGCg -3'
miRNA:   3'- -CCCaUGCGGUCUCCACCU-CUa---GC--UCG- -5'
21560 5' -55.2 NC_004812.1 + 122283 0.78 0.359458
Target:  5'- gGGGgcgcggcgGCGCCGGAGGgccgccggGGGGAggCGGGCg -3'
miRNA:   3'- -CCCa-------UGCGGUCUCCa-------CCUCUa-GCUCG- -5'
21560 5' -55.2 NC_004812.1 + 80007 0.78 0.367403
Target:  5'- cGGGUACuCCAGAaaGGUGGGGAgcucgacggcCGAGCa -3'
miRNA:   3'- -CCCAUGcGGUCU--CCACCUCUa---------GCUCG- -5'
21560 5' -55.2 NC_004812.1 + 149092 0.77 0.391953
Target:  5'- aGGGgcggcGCGCCGcGGGGcGGGGGUUGGGCg -3'
miRNA:   3'- -CCCa----UGCGGU-CUCCaCCUCUAGCUCG- -5'
21560 5' -55.2 NC_004812.1 + 143932 0.77 0.426301
Target:  5'- uGGGuUGCGUgGGAGGUGGGGG-CGGGg -3'
miRNA:   3'- -CCC-AUGCGgUCUCCACCUCUaGCUCg -5'
21560 5' -55.2 NC_004812.1 + 5992 0.76 0.453204
Target:  5'- gGGGUgguagGCGCCGGGGGgcgaggggaagGGGGAcgCGGGCa -3'
miRNA:   3'- -CCCA-----UGCGGUCUCCa----------CCUCUa-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.