Results 41 - 60 of 310 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21567 | 3' | -60.4 | NC_004812.1 | + | 105204 | 0.66 | 0.759388 |
Target: 5'- cGGGgcgcggGCGCGGGCcccgGGCUcuucgaaggacacCCGgGCGGg- -3' miRNA: 3'- -CCCa-----UGCGCUCG----UCGA-------------GGCgCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 20103 | 0.66 | 0.722743 |
Target: 5'- aGGaGCGCGccgcgcGCAGCggCGCGCGGg- -3' miRNA: 3'- cCCaUGCGCu-----CGUCGagGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 128764 | 0.66 | 0.760309 |
Target: 5'- cGGGcucGgGCGGGCcGCagCGCGCGG-Cg -3' miRNA: 3'- -CCCa--UgCGCUCGuCGagGCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 107417 | 0.66 | 0.754769 |
Target: 5'- cGGGUGCGgccaggcccaccggcCGcGCGGCggCCGuCGCGGa- -3' miRNA: 3'- -CCCAUGC---------------GCuCGUCGa-GGC-GCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 62008 | 0.66 | 0.722743 |
Target: 5'- cGGUGCGCGGGaCAGg-CCGCggcgagGCGGcCu -3' miRNA: 3'- cCCAUGCGCUC-GUCgaGGCG------CGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 129251 | 0.66 | 0.713149 |
Target: 5'- cGGGccGCGCGccAGCAGCg--GCGCGG-Cg -3' miRNA: 3'- -CCCa-UGCGC--UCGUCGaggCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 145632 | 0.66 | 0.721787 |
Target: 5'- gGGGcGCGCcAGCacGGCcaccucaucaccuUCCGCGCGGa- -3' miRNA: 3'- -CCCaUGCGcUCG--UCG-------------AGGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 51270 | 0.66 | 0.722743 |
Target: 5'- cGGGcccucgucGCGCGAGCauGGCgucCCG-GCGGUUa -3' miRNA: 3'- -CCCa-------UGCGCUCG--UCGa--GGCgCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 154720 | 0.66 | 0.732264 |
Target: 5'- gGGGUGcCGCGGGCggGGC-CCGgGCGc-- -3' miRNA: 3'- -CCCAU-GCGCUCG--UCGaGGCgCGCcag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 3256 | 0.66 | 0.760309 |
Target: 5'- cGGGcucGgGCGGGCcGCagCGCGCGG-Cg -3' miRNA: 3'- -CCCa--UgCGCUCGuCGagGCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 11685 | 0.66 | 0.732264 |
Target: 5'- cGGcACuCGGGCAGCUgCGgGUGGUa -3' miRNA: 3'- cCCaUGcGCUCGUCGAgGCgCGCCAg -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 59292 | 0.66 | 0.732264 |
Target: 5'- aGGuUGCGCaucAGCuGCUCCaccuCGCGGUCc -3' miRNA: 3'- cCC-AUGCGc--UCGuCGAGGc---GCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 152736 | 0.66 | 0.732264 |
Target: 5'- uGGcUGCGCGAGCuGCgccgCaCGCGCGa-- -3' miRNA: 3'- cCC-AUGCGCUCGuCGa---G-GCGCGCcag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 79439 | 0.66 | 0.732264 |
Target: 5'- gGGGUuuG-GGGUGGCgccuUCCGCGCGG-Cg -3' miRNA: 3'- -CCCAugCgCUCGUCG----AGGCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 28202 | 0.66 | 0.713149 |
Target: 5'- cGGUGCGCGAucagaaagucGCGucGCUCCGCuugcuccuccacGCGGa- -3' miRNA: 3'- cCCAUGCGCU----------CGU--CGAGGCG------------CGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 130258 | 0.66 | 0.713149 |
Target: 5'- cGGGg--GCG-GCGGCUCgGCGcCGGg- -3' miRNA: 3'- -CCCaugCGCuCGUCGAGgCGC-GCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 154746 | 0.66 | 0.722743 |
Target: 5'- gGGGU-CGCgGAGgAGCgggccggggCUGCGCGGg- -3' miRNA: 3'- -CCCAuGCG-CUCgUCGa--------GGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 117260 | 0.66 | 0.722743 |
Target: 5'- cGGGccCGcCGAGC-GCUCCG-GCGGg- -3' miRNA: 3'- -CCCauGC-GCUCGuCGAGGCgCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 122461 | 0.66 | 0.722743 |
Target: 5'- cGGGgGCGCGGGCgccccuggcgGGCgCCGgGUGGa- -3' miRNA: 3'- -CCCaUGCGCUCG----------UCGaGGCgCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 123638 | 0.66 | 0.732264 |
Target: 5'- aGG-ACGCG-GCGGCggUCCGgacgGCGGUCc -3' miRNA: 3'- cCCaUGCGCuCGUCG--AGGCg---CGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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