miRNA display CGI


Results 81 - 100 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 93970 0.67 0.674212
Target:  5'- uGGGUGUGUGuuuuGUUCCGCGCGGg- -3'
miRNA:   3'- -CCCAUGCGCucguCGAGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 151697 0.67 0.664378
Target:  5'- cGGGccGCaGCGAGCGGCggCGCGCGcG-Cg -3'
miRNA:   3'- -CCCa-UG-CGCUCGUCGagGCGCGC-CaG- -5'
21567 3' -60.4 NC_004812.1 + 54767 0.67 0.664378
Target:  5'- cGGcGCGCGGGCGGCUacggggGCGgcUGGUCg -3'
miRNA:   3'- cCCaUGCGCUCGUCGAgg----CGC--GCCAG- -5'
21567 3' -60.4 NC_004812.1 + 19021 0.67 0.654519
Target:  5'- cGGGccggcgcaGCGCGGGCGGCagccucucggCCGCgGCGGcCg -3'
miRNA:   3'- -CCCa-------UGCGCUCGUCGa---------GGCG-CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 106346 0.67 0.664378
Target:  5'- cGGUuCGCGcccGGCgAGCUCCGgGUGGa- -3'
miRNA:   3'- cCCAuGCGC---UCG-UCGAGGCgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 104035 0.67 0.664378
Target:  5'- cGGGgccgucgcgGCGuCGGGgAGCUCgGCGgugcCGGUCg -3'
miRNA:   3'- -CCCa--------UGC-GCUCgUCGAGgCGC----GCCAG- -5'
21567 3' -60.4 NC_004812.1 + 149114 0.67 0.664378
Target:  5'- gGGGUugGgCGcccCGGUcgUCCGCGCGGcCg -3'
miRNA:   3'- -CCCAugC-GCuc-GUCG--AGGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 87329 0.67 0.664378
Target:  5'- uGGaGCGCGGcccgacgauGCGGCUCauggaGCGCGGg- -3'
miRNA:   3'- cCCaUGCGCU---------CGUCGAGg----CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 699 0.67 0.664378
Target:  5'- cGGGUcCG-GAGCuccgucggcgucGGCgCCgGCGCGGUCg -3'
miRNA:   3'- -CCCAuGCgCUCG------------UCGaGG-CGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 37181 0.67 0.693777
Target:  5'- -uGUGCGCGAggaccuGCAGCgUCagcaGCGCGGg- -3'
miRNA:   3'- ccCAUGCGCU------CGUCG-AGg---CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 118324 0.67 0.703491
Target:  5'- aGGGgcagaugACGCcgGAGCAGUU-UGCGCGGcCg -3'
miRNA:   3'- -CCCa------UGCG--CUCGUCGAgGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 154864 0.67 0.703491
Target:  5'- aGGGgGCGCGGGCucgGGCcgcggaggCGCGCGGg- -3'
miRNA:   3'- -CCCaUGCGCUCG---UCGag------GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 99265 0.67 0.703491
Target:  5'- aGGcACGCaccGGCGGC-CCGUGgGGUCc -3'
miRNA:   3'- cCCaUGCGc--UCGUCGaGGCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 119486 0.67 0.703491
Target:  5'- cGGGgcCGCGgcggcaggGGCGGCgUCCGCG-GGcCg -3'
miRNA:   3'- -CCCauGCGC--------UCGUCG-AGGCGCgCCaG- -5'
21567 3' -60.4 NC_004812.1 + 131447 0.67 0.693777
Target:  5'- cGGaGCGCGggggcgaccGGCGGCUCCGCcCcGUCg -3'
miRNA:   3'- cCCaUGCGC---------UCGUCGAGGCGcGcCAG- -5'
21567 3' -60.4 NC_004812.1 + 581 0.67 0.693777
Target:  5'- uGGagcCGCGGGCgcGGCUCCgguaGCGCGGa- -3'
miRNA:   3'- cCCau-GCGCUCG--UCGAGG----CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 98376 0.67 0.693777
Target:  5'- aGGUACGgguccuCGGGCGGCgcggcggCCGCGgGG-Cg -3'
miRNA:   3'- cCCAUGC------GCUCGUCGa------GGCGCgCCaG- -5'
21567 3' -60.4 NC_004812.1 + 6316 0.67 0.693777
Target:  5'- cGGGcACGCGGGgGGCcCCGgGCaGGa- -3'
miRNA:   3'- -CCCaUGCGCUCgUCGaGGCgCG-CCag -5'
21567 3' -60.4 NC_004812.1 + 98694 0.67 0.684014
Target:  5'- cGGUcgaaccgccGCGCcggGGGCGGCggCGCGgGGUCg -3'
miRNA:   3'- cCCA---------UGCG---CUCGUCGagGCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 138036 0.67 0.697669
Target:  5'- cGGGUGCgGCGgcggcGGCGGCggagcgggcccgcgCCGCGCuGGcCg -3'
miRNA:   3'- -CCCAUG-CGC-----UCGUCGa-------------GGCGCG-CCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.