miRNA display CGI


Results 21 - 40 of 310 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 36923 0.74 0.311064
Target:  5'- aGGGgACGCGGGCAGCgaCUGCGCGc-- -3'
miRNA:   3'- -CCCaUGCGCUCGUCGa-GGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 56123 0.74 0.325095
Target:  5'- cGGUACGCcuGCGcGCUCCGgGCGGcCg -3'
miRNA:   3'- cCCAUGCGcuCGU-CGAGGCgCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 129413 0.74 0.297498
Target:  5'- cGGGcgcggcgGCGCG-GCGGCggggCCGCGCGG-Cg -3'
miRNA:   3'- -CCCa------UGCGCuCGUCGa---GGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 3905 0.74 0.297498
Target:  5'- cGGGcgcggcgGCGCG-GCGGCggggCCGCGCGG-Cg -3'
miRNA:   3'- -CCCa------UGCGCuCGUCGa---GGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 6021 0.74 0.318021
Target:  5'- aGGGggACGCGGGCAGCgaCUGCGCGc-- -3'
miRNA:   3'- -CCCa-UGCGCUCGUCGa-GGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 118639 0.73 0.362202
Target:  5'- aGGGagaggGCGCcugGAGCGGC-CCugGCGCGGUCc -3'
miRNA:   3'- -CCCa----UGCG---CUCGUCGaGG--CGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 87840 0.73 0.339591
Target:  5'- --cUGCGCGAGCAGCUCgGCGUGcG-Cg -3'
miRNA:   3'- cccAUGCGCUCGUCGAGgCGCGC-CaG- -5'
21567 3' -60.4 NC_004812.1 + 95054 0.73 0.347013
Target:  5'- gGGGUcccgGCGCGAGCGGCUacgcgaCCGcCGCcGUCc -3'
miRNA:   3'- -CCCA----UGCGCUCGUCGA------GGC-GCGcCAG- -5'
21567 3' -60.4 NC_004812.1 + 76284 0.73 0.332285
Target:  5'- cGGcGCGCGcggccgccuccAGCAGCgCgGCGCGGUCg -3'
miRNA:   3'- cCCaUGCGC-----------UCGUCGaGgCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 149540 0.73 0.362202
Target:  5'- aGGGagaggGCGCcugGAGCGGC-CCugGCGCGGUCc -3'
miRNA:   3'- -CCCa----UGCG---CUCGUCGaGG--CGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 134106 0.73 0.347013
Target:  5'- cGGUGCGUGAcGguGgUCCGCGCgccgauggGGUCg -3'
miRNA:   3'- cCCAUGCGCU-CguCgAGGCGCG--------CCAG- -5'
21567 3' -60.4 NC_004812.1 + 124176 0.73 0.339591
Target:  5'- cGGUACGUgGGGCGGCUggGCGCGGcCg -3'
miRNA:   3'- cCCAUGCG-CUCGUCGAggCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 105256 0.73 0.338855
Target:  5'- uGGG-GCGCGGGCGGCUCCccggcgacuccgaGgGCGGg- -3'
miRNA:   3'- -CCCaUGCGCUCGUCGAGG-------------CgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 58288 0.73 0.332285
Target:  5'- cGGcGUACGCGAGcCAGCacCCGCGCGc-- -3'
miRNA:   3'- -CC-CAUGCGCUC-GUCGa-GGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 75810 0.72 0.402151
Target:  5'- cGGGcggcCGCGAGCGGCggcagcgCCGgGUGGUg -3'
miRNA:   3'- -CCCau--GCGCUCGUCGa------GGCgCGCCAg -5'
21567 3' -60.4 NC_004812.1 + 89399 0.72 0.385837
Target:  5'- aGGGagccCGCGGGC-GCcgCCGcCGCGGUCa -3'
miRNA:   3'- -CCCau--GCGCUCGuCGa-GGC-GCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 102751 0.72 0.389065
Target:  5'- aGGG-ACGCGuaggcGGCGGCgucgucgagcccccCCGCGUGGUCu -3'
miRNA:   3'- -CCCaUGCGC-----UCGUCGa-------------GGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 117624 0.72 0.393939
Target:  5'- gGGGgcgGCGCGGGCcgccgGGCgCgGCGgGGUCg -3'
miRNA:   3'- -CCCa--UGCGCUCG-----UCGaGgCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 51608 0.72 0.385837
Target:  5'- cGGG-GCGCGAGgGGCgCCGCgGCGGcCc -3'
miRNA:   3'- -CCCaUGCGCUCgUCGaGGCG-CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 6830 0.72 0.402151
Target:  5'- uGGGUGgG-GGGCGGCggcCCuCGCGGUCg -3'
miRNA:   3'- -CCCAUgCgCUCGUCGa--GGcGCGCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.