miRNA display CGI


Results 41 - 60 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 89399 0.72 0.385837
Target:  5'- aGGGagccCGCGGGC-GCcgCCGcCGCGGUCa -3'
miRNA:   3'- -CCCau--GCGCUCGuCGa-GGC-GCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 37731 0.72 0.402151
Target:  5'- uGGGUGgG-GGGCGGCggcCCuCGCGGUCg -3'
miRNA:   3'- -CCCAUgCgCUCGUCGa--GGcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 148525 0.72 0.393939
Target:  5'- gGGGgcgGCGCGGGCcgccgGGCgCgGCGgGGUCg -3'
miRNA:   3'- -CCCa--UGCGCUCG-----UCGaGgCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 51608 0.72 0.385837
Target:  5'- cGGG-GCGCGAGgGGCgCCGCgGCGGcCc -3'
miRNA:   3'- -CCCaUGCGCUCgUCGaGGCG-CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 151836 0.71 0.462537
Target:  5'- cGGGUACGCcAGCGGCgagCCGUGgccCGG-Cg -3'
miRNA:   3'- -CCCAUGCGcUCGUCGa--GGCGC---GCCaG- -5'
21567 3' -60.4 NC_004812.1 + 103635 0.71 0.462537
Target:  5'- cGGUAgcucuccuCGCGGGCgcggAGCUCgGCGCGGa- -3'
miRNA:   3'- cCCAU--------GCGCUCG----UCGAGgCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 101998 0.71 0.462537
Target:  5'- gGGGUcGCGCGAcucGCGGCgccgCCGCGagGGUg -3'
miRNA:   3'- -CCCA-UGCGCU---CGUCGa---GGCGCg-CCAg -5'
21567 3' -60.4 NC_004812.1 + 152973 0.71 0.462537
Target:  5'- ---gACGCGGGCGGCgCCGCGCGc-- -3'
miRNA:   3'- cccaUGCGCUCGUCGaGGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 128041 0.71 0.453615
Target:  5'- ---aGCGCGGGCAGCaCgGCGCGG-Cg -3'
miRNA:   3'- cccaUGCGCUCGUCGaGgCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 45304 0.71 0.453615
Target:  5'- uGGcGUugGCGGGCAGg-CCGagcaggGCGGUCu -3'
miRNA:   3'- -CC-CAugCGCUCGUCgaGGCg-----CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 74925 0.71 0.448306
Target:  5'- aGGcGCGCGAGCGGgUCgggggagccgucgcgCGcCGCGGUCa -3'
miRNA:   3'- cCCaUGCGCUCGUCgAG---------------GC-GCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 61214 0.71 0.436056
Target:  5'- cGGGcGCGCGGGCuuccGggUCGCGCGaGUCg -3'
miRNA:   3'- -CCCaUGCGCUCGu---CgaGGCGCGC-CAG- -5'
21567 3' -60.4 NC_004812.1 + 155737 0.71 0.466132
Target:  5'- gGGGgcgcGCGCGGGCggGGCUCgcggccgcggggacaCGCGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCG--UCGAG---------------GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 14574 0.71 0.471551
Target:  5'- aGGGgcaggccCGCGGGCGuCUCCaGCGCGGcCa -3'
miRNA:   3'- -CCCau-----GCGCUCGUcGAGG-CGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 2533 0.71 0.453615
Target:  5'- ---aGCGCGGGCAGCaCgGCGCGG-Cg -3'
miRNA:   3'- cccaUGCGCUCGUCGaGgCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 89205 0.71 0.444787
Target:  5'- uGGGaGC-CGGGgcccCGGCUCCGCGCGG-Cg -3'
miRNA:   3'- -CCCaUGcGCUC----GUCGAGGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 107468 0.71 0.453615
Target:  5'- -cGUugGCGAGCAGCcgCUggaggaccacgaGCGCGGUg -3'
miRNA:   3'- ccCAugCGCUCGUCGa-GG------------CGCGCCAg -5'
21567 3' -60.4 NC_004812.1 + 61033 0.71 0.444787
Target:  5'- ---cGCGCGGGC-GCggCCGUGCGGUUa -3'
miRNA:   3'- cccaUGCGCUCGuCGa-GGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 14100 0.71 0.444787
Target:  5'- cGGGUgaACGCGGGgAGCgcgCCGUGCGuGa- -3'
miRNA:   3'- -CCCA--UGCGCUCgUCGa--GGCGCGC-Cag -5'
21567 3' -60.4 NC_004812.1 + 94334 0.71 0.444787
Target:  5'- aGGUGUGCGGcGCGGC-CUGCGCGGg- -3'
miRNA:   3'- cCCAUGCGCU-CGUCGaGGCGCGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.