Results 61 - 80 of 310 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21567 | 3' | -60.4 | NC_004812.1 | + | 152973 | 0.71 | 0.462537 |
Target: 5'- ---gACGCGGGCGGCgCCGCGCGc-- -3' miRNA: 3'- cccaUGCGCUCGUCGaGGCGCGCcag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 128041 | 0.71 | 0.453615 |
Target: 5'- ---aGCGCGGGCAGCaCgGCGCGG-Cg -3' miRNA: 3'- cccaUGCGCUCGUCGaGgCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 45304 | 0.71 | 0.453615 |
Target: 5'- uGGcGUugGCGGGCAGg-CCGagcaggGCGGUCu -3' miRNA: 3'- -CC-CAugCGCUCGUCgaGGCg-----CGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 61214 | 0.71 | 0.436056 |
Target: 5'- cGGGcGCGCGGGCuuccGggUCGCGCGaGUCg -3' miRNA: 3'- -CCCaUGCGCUCGu---CgaGGCGCGC-CAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 43031 | 0.7 | 0.508453 |
Target: 5'- gGGGUGCGgGGGCGGUggggGUGCGGg- -3' miRNA: 3'- -CCCAUGCgCUCGUCGagg-CGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 42997 | 0.7 | 0.508453 |
Target: 5'- gGGGUGCGgGGGCGGUggggGUGCGGg- -3' miRNA: 3'- -CCCAUGCgCUCGUCGagg-CGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 147745 | 0.7 | 0.527357 |
Target: 5'- gGGGUcCGCGGGacgcggGGCUCC-CGCGGg- -3' miRNA: 3'- -CCCAuGCGCUCg-----UCGAGGcGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 150695 | 0.7 | 0.51787 |
Target: 5'- cGGGcgGCGuCGcGGCGGCUCCGCccgccgGCGGa- -3' miRNA: 3'- -CCCa-UGC-GC-UCGUCGAGGCG------CGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 74356 | 0.7 | 0.51787 |
Target: 5'- aGGG-GCGCGGGC-GCgggCgGCGgGGUCc -3' miRNA: 3'- -CCCaUGCGCUCGuCGa--GgCGCgCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 62148 | 0.7 | 0.516926 |
Target: 5'- cGGcgGCGCGGGCGGcCUCCGgguucuucgggccCGCGGcCg -3' miRNA: 3'- cCCa-UGCGCUCGUC-GAGGC-------------GCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 32291 | 0.7 | 0.51787 |
Target: 5'- cGGGgcCGUGAGCuGCUCCuCGgGGg- -3' miRNA: 3'- -CCCauGCGCUCGuCGAGGcGCgCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 20238 | 0.7 | 0.515038 |
Target: 5'- uGGGccaggccucCGCGGGCAGCUCCgagaGCGCcgccucuaggacgaGGUCg -3' miRNA: 3'- -CCCau-------GCGCUCGUCGAGG----CGCG--------------CCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 71328 | 0.7 | 0.479739 |
Target: 5'- cGGUuggaagaACGCGGGCGGCUUCGaCGgGGg- -3' miRNA: 3'- cCCA-------UGCGCUCGUCGAGGC-GCgCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 155041 | 0.7 | 0.480653 |
Target: 5'- gGGGgggACcCGGGCGGCUCgCGCGCGu-- -3' miRNA: 3'- -CCCa--UGcGCUCGUCGAG-GCGCGCcag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 8023 | 0.7 | 0.480653 |
Target: 5'- cGGGggGCGCGGGcCGGcCUCCGC-CGG-Ca -3' miRNA: 3'- -CCCa-UGCGCUC-GUC-GAGGCGcGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 70859 | 0.7 | 0.48984 |
Target: 5'- aGGagACGCGGGgGGCguggCUGCGCGGg- -3' miRNA: 3'- cCCa-UGCGCUCgUCGa---GGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 127493 | 0.7 | 0.508453 |
Target: 5'- gGGGgagGgGUGGGCGGgUcCCGCcgGCGGUCg -3' miRNA: 3'- -CCCa--UgCGCUCGUCgA-GGCG--CGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 67381 | 0.7 | 0.48984 |
Target: 5'- uGGcgGCGCGGGCcuccGCcgCCGCGCGGa- -3' miRNA: 3'- cCCa-UGCGCUCGu---CGa-GGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 43065 | 0.7 | 0.508453 |
Target: 5'- gGGGUGCGgGGGCGGUggggGUGCGGg- -3' miRNA: 3'- -CCCAUGCgCUCGUCGagg-CGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 74746 | 0.7 | 0.48984 |
Target: 5'- uGGaGcGCGCGcAGCuGCUCgCGCGCGGcCc -3' miRNA: 3'- -CC-CaUGCGC-UCGuCGAG-GCGCGCCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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