miRNA display CGI


Results 81 - 100 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 8023 0.7 0.480653
Target:  5'- cGGGggGCGCGGGcCGGcCUCCGC-CGG-Ca -3'
miRNA:   3'- -CCCa-UGCGCUC-GUC-GAGGCGcGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 155041 0.7 0.480653
Target:  5'- gGGGgggACcCGGGCGGCUCgCGCGCGu-- -3'
miRNA:   3'- -CCCa--UGcGCUCGUCGAG-GCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 82769 0.7 0.480653
Target:  5'- aGGGcggACGagcucagGAGCGGCUCCuCGgGGUCg -3'
miRNA:   3'- -CCCa--UGCg------CUCGUCGAGGcGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 147745 0.7 0.527357
Target:  5'- gGGGUcCGCGGGacgcggGGCUCC-CGCGGg- -3'
miRNA:   3'- -CCCAuGCGCUCg-----UCGAGGcGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 143932 0.7 0.499108
Target:  5'- cGGGgcUGCGAGgucaugauCGGCUCCauGCGCGG-Cg -3'
miRNA:   3'- -CCCauGCGCUC--------GUCGAGG--CGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 116391 0.7 0.51787
Target:  5'- cGGccagGCGCGGGCGGUcgccgaUCCGCuGCGGg- -3'
miRNA:   3'- cCCa---UGCGCUCGUCG------AGGCG-CGCCag -5'
21567 3' -60.4 NC_004812.1 + 29533 0.7 0.480653
Target:  5'- gGGGgggACcCGGGCGGCUCgCGCGCGu-- -3'
miRNA:   3'- -CCCa--UGcGCUCGUCGAG-GCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 38924 0.7 0.480653
Target:  5'- cGGGggGCGCGGGcCGGcCUCCGC-CGG-Ca -3'
miRNA:   3'- -CCCa-UGCGCUC-GUC-GAGGCGcGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 15941 0.7 0.480653
Target:  5'- gGGGUcACGCGuagacguaGGCGGCgcguggcgccgCCGCGCGG-Cg -3'
miRNA:   3'- -CCCA-UGCGC--------UCGUCGa----------GGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 13366 0.7 0.499108
Target:  5'- cGGGggUGCG-GCGGUcccuUCCGCGCcgggGGUCg -3'
miRNA:   3'- -CCCauGCGCuCGUCG----AGGCGCG----CCAG- -5'
21567 3' -60.4 NC_004812.1 + 71328 0.7 0.479739
Target:  5'- cGGUuggaagaACGCGGGCGGCUUCGaCGgGGg- -3'
miRNA:   3'- cCCA-------UGCGCUCGUCGAGGC-GCgCCag -5'
21567 3' -60.4 NC_004812.1 + 59666 0.7 0.527357
Target:  5'- cGGGccgGCGCGGGCGccGCguugCCGCGCGcG-Cg -3'
miRNA:   3'- -CCCa--UGCGCUCGU--CGa---GGCGCGC-CaG- -5'
21567 3' -60.4 NC_004812.1 + 18426 0.7 0.527357
Target:  5'- uGGGU-CGCGcGCGGCgggggCCGCGUccGGUg -3'
miRNA:   3'- -CCCAuGCGCuCGUCGa----GGCGCG--CCAg -5'
21567 3' -60.4 NC_004812.1 + 79557 0.7 0.527357
Target:  5'- aGGcGCGCGAGC-GCcucgCCGCGCGcGUg -3'
miRNA:   3'- cCCaUGCGCUCGuCGa---GGCGCGC-CAg -5'
21567 3' -60.4 NC_004812.1 + 141760 0.7 0.527357
Target:  5'- cGGGcggcCGCgGGGCGGCgucgaacggCCGCGCGGg- -3'
miRNA:   3'- -CCCau--GCG-CUCGUCGa--------GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 132978 0.69 0.565896
Target:  5'- cGGGgaccGCGCGcccCGGCggCCGCGCGGa- -3'
miRNA:   3'- -CCCa---UGCGCuc-GUCGa-GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 4904 0.69 0.575652
Target:  5'- cGGUGCGUGuGCgccAGCgaauaaacCCGCGCGGg- -3'
miRNA:   3'- cCCAUGCGCuCG---UCGa-------GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 25872 0.69 0.565896
Target:  5'- gGGGUugGCG-GCGGCcggcccUCC-CGCGG-Cg -3'
miRNA:   3'- -CCCAugCGCuCGUCG------AGGcGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 19900 0.69 0.565896
Target:  5'- cGGGggACGCG-GCGGC-CCGCGCcGcCg -3'
miRNA:   3'- -CCCa-UGCGCuCGUCGaGGCGCGcCaG- -5'
21567 3' -60.4 NC_004812.1 + 84998 0.69 0.575652
Target:  5'- gGGGUccugucGCGCcgaGAGCGGCUguaCgCGCGCGGg- -3'
miRNA:   3'- -CCCA------UGCG---CUCGUCGA---G-GCGCGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.