miRNA display CGI


Results 101 - 120 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 155574 0.69 0.536908
Target:  5'- aGGGgcgcGCGCGGGCGGCcgggCCcuCGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCGUCGa---GGc-GCGCCag -5'
21567 3' -60.4 NC_004812.1 + 84998 0.69 0.575652
Target:  5'- gGGGUccugucGCGCcgaGAGCGGCUguaCgCGCGCGGg- -3'
miRNA:   3'- -CCCA------UGCG---CUCGUCGA---G-GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 19900 0.69 0.565896
Target:  5'- cGGGggACGCG-GCGGC-CCGCGCcGcCg -3'
miRNA:   3'- -CCCa-UGCGCuCGUCGaGGCGCGcCaG- -5'
21567 3' -60.4 NC_004812.1 + 116201 0.69 0.546518
Target:  5'- cGGGcuacUACGCG-GCcuGGCUCgCGCggGCGGUCc -3'
miRNA:   3'- -CCC----AUGCGCuCG--UCGAG-GCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 38562 0.69 0.556183
Target:  5'- aGGUGcCGCGGGgGGaagaUCCGCG-GGUCc -3'
miRNA:   3'- cCCAU-GCGCUCgUCg---AGGCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 42717 0.69 0.556183
Target:  5'- cGGgcCGCGGGCGGUuggCCGCGgccacagaGGUCg -3'
miRNA:   3'- cCCauGCGCUCGUCGa--GGCGCg-------CCAG- -5'
21567 3' -60.4 NC_004812.1 + 15742 0.69 0.556183
Target:  5'- aGGGgccGCGgGGGCcGC-CCGCGCcGUCa -3'
miRNA:   3'- -CCCa--UGCgCUCGuCGaGGCGCGcCAG- -5'
21567 3' -60.4 NC_004812.1 + 59599 0.69 0.585446
Target:  5'- uGGGgGCGCGGGCGGCgCuCGCGaacCGGg- -3'
miRNA:   3'- -CCCaUGCGCUCGUCGaG-GCGC---GCCag -5'
21567 3' -60.4 NC_004812.1 + 94321 0.69 0.585446
Target:  5'- cGGcUGCGCG-GCGGUgaCCGCGUgGGUCu -3'
miRNA:   3'- cCC-AUGCGCuCGUCGa-GGCGCG-CCAG- -5'
21567 3' -60.4 NC_004812.1 + 72832 0.69 0.585446
Target:  5'- gGGGgcucccCGCGAGCGGCcgCCggcgaucaGCGCGGa- -3'
miRNA:   3'- -CCCau----GCGCUCGUCGa-GG--------CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 142308 0.69 0.579565
Target:  5'- cGGGccgGCGCGgcggGGCgcgcccuacugauucGGCgaccgCCGUGCGGUCg -3'
miRNA:   3'- -CCCa--UGCGC----UCG---------------UCGa----GGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 137168 0.69 0.575652
Target:  5'- uGGUACGCGAGCuccgugcacgaGGCgaggCUGCuGCGG-Cg -3'
miRNA:   3'- cCCAUGCGCUCG-----------UCGa---GGCG-CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 35841 0.69 0.575652
Target:  5'- cGGUACuuGcGCAGCagCGCGgGGUCg -3'
miRNA:   3'- cCCAUGcgCuCGUCGagGCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 23797 0.69 0.575652
Target:  5'- -cGUGCGCG-GCuccauGCgcgCCGCGCGGg- -3'
miRNA:   3'- ccCAUGCGCuCGu----CGa--GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 4904 0.69 0.575652
Target:  5'- cGGUGCGUGuGCgccAGCgaauaaacCCGCGCGGg- -3'
miRNA:   3'- cCCAUGCGCuCG---UCGa-------GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 50276 0.69 0.546518
Target:  5'- cGG-GCGCGAaccgGCGGgUCUGCGCGGg- -3'
miRNA:   3'- cCCaUGCGCU----CGUCgAGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 146260 0.69 0.546518
Target:  5'- cGGGgcgcgACGCGgcgaGGCGGCgaaCCGCGCuGGcCa -3'
miRNA:   3'- -CCCa----UGCGC----UCGUCGa--GGCGCG-CCaG- -5'
21567 3' -60.4 NC_004812.1 + 132978 0.69 0.565896
Target:  5'- cGGGgaccGCGCGcccCGGCggCCGCGCGGa- -3'
miRNA:   3'- -CCCa---UGCGCuc-GUCGa-GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 25872 0.69 0.565896
Target:  5'- gGGGUugGCG-GCGGCcggcccUCC-CGCGG-Cg -3'
miRNA:   3'- -CCCAugCGCuCGUCG------AGGcGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 136170 0.69 0.560062
Target:  5'- cGGGUugGCGuccgcggacguccggGGCAGggCCGCGUG-UCg -3'
miRNA:   3'- -CCCAugCGC---------------UCGUCgaGGCGCGCcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.