Results 41 - 60 of 310 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21567 | 3' | -60.4 | NC_004812.1 | + | 37731 | 0.72 | 0.402151 |
Target: 5'- uGGGUGgG-GGGCGGCggcCCuCGCGGUCg -3' miRNA: 3'- -CCCAUgCgCUCGUCGa--GGcGCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 46902 | 0.72 | 0.402151 |
Target: 5'- cGGGgcggGCGCG-GCGGCcgCCGCcGCGG-Cg -3' miRNA: 3'- -CCCa---UGCGCuCGUCGa-GGCG-CGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 75810 | 0.72 | 0.402151 |
Target: 5'- cGGGcggcCGCGAGCGGCggcagcgCCGgGUGGUg -3' miRNA: 3'- -CCCau--GCGCUCGUCGa------GGCgCGCCAg -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 137173 | 0.72 | 0.41047 |
Target: 5'- aGGUGCGgGAgGCGGUccugcggCCGCGCGGcCa -3' miRNA: 3'- cCCAUGCgCU-CGUCGa------GGCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 61214 | 0.71 | 0.436056 |
Target: 5'- cGGGcGCGCGGGCuuccGggUCGCGCGaGUCg -3' miRNA: 3'- -CCCaUGCGCUCGu---CgaGGCGCGC-CAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 94334 | 0.71 | 0.444787 |
Target: 5'- aGGUGUGCGGcGCGGC-CUGCGCGGg- -3' miRNA: 3'- cCCAUGCGCU-CGUCGaGGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 61033 | 0.71 | 0.444787 |
Target: 5'- ---cGCGCGGGC-GCggCCGUGCGGUUa -3' miRNA: 3'- cccaUGCGCUCGuCGa-GGCGCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 89205 | 0.71 | 0.444787 |
Target: 5'- uGGGaGC-CGGGgcccCGGCUCCGCGCGG-Cg -3' miRNA: 3'- -CCCaUGcGCUC----GUCGAGGCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 14100 | 0.71 | 0.444787 |
Target: 5'- cGGGUgaACGCGGGgAGCgcgCCGUGCGuGa- -3' miRNA: 3'- -CCCA--UGCGCUCgUCGa--GGCGCGC-Cag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 74925 | 0.71 | 0.448306 |
Target: 5'- aGGcGCGCGAGCGGgUCgggggagccgucgcgCGcCGCGGUCa -3' miRNA: 3'- cCCaUGCGCUCGUCgAG---------------GC-GCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 128041 | 0.71 | 0.453615 |
Target: 5'- ---aGCGCGGGCAGCaCgGCGCGG-Cg -3' miRNA: 3'- cccaUGCGCUCGUCGaGgCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 45304 | 0.71 | 0.453615 |
Target: 5'- uGGcGUugGCGGGCAGg-CCGagcaggGCGGUCu -3' miRNA: 3'- -CC-CAugCGCUCGUCgaGGCg-----CGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 107468 | 0.71 | 0.453615 |
Target: 5'- -cGUugGCGAGCAGCcgCUggaggaccacgaGCGCGGUg -3' miRNA: 3'- ccCAugCGCUCGUCGa-GG------------CGCGCCAg -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 2533 | 0.71 | 0.453615 |
Target: 5'- ---aGCGCGGGCAGCaCgGCGCGG-Cg -3' miRNA: 3'- cccaUGCGCUCGUCGaGgCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 101998 | 0.71 | 0.462537 |
Target: 5'- gGGGUcGCGCGAcucGCGGCgccgCCGCGagGGUg -3' miRNA: 3'- -CCCA-UGCGCU---CGUCGa---GGCGCg-CCAg -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 151836 | 0.71 | 0.462537 |
Target: 5'- cGGGUACGCcAGCGGCgagCCGUGgccCGG-Cg -3' miRNA: 3'- -CCCAUGCGcUCGUCGa--GGCGC---GCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 27465 | 0.71 | 0.462537 |
Target: 5'- ---gACGCGGGCGGCgCCGCGCGc-- -3' miRNA: 3'- cccaUGCGCUCGUCGaGGCGCGCcag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 25186 | 0.71 | 0.462537 |
Target: 5'- cGGGgcgGCGuCGcGGCGGCUCCGCccgccgGCGGa- -3' miRNA: 3'- -CCCa--UGC-GC-UCGUCGAGGCG------CGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 103635 | 0.71 | 0.462537 |
Target: 5'- cGGUAgcucuccuCGCGGGCgcggAGCUCgGCGCGGa- -3' miRNA: 3'- cCCAU--------GCGCUCG----UCGAGgCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 152973 | 0.71 | 0.462537 |
Target: 5'- ---gACGCGGGCGGCgCCGCGCGc-- -3' miRNA: 3'- cccaUGCGCUCGUCGaGGCGCGCcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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