Results 61 - 80 of 310 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21567 | 3' | -60.4 | NC_004812.1 | + | 25186 | 0.71 | 0.462537 |
Target: 5'- cGGGgcgGCGuCGcGGCGGCUCCGCccgccgGCGGa- -3' miRNA: 3'- -CCCa--UGC-GC-UCGUCGAGGCG------CGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 30229 | 0.71 | 0.466132 |
Target: 5'- gGGGgcgcGCGCGGGCggGGCUCgcggccgcggggacaCGCGCGGg- -3' miRNA: 3'- -CCCa---UGCGCUCG--UCGAG---------------GCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 155737 | 0.71 | 0.466132 |
Target: 5'- gGGGgcgcGCGCGGGCggGGCUCgcggccgcggggacaCGCGCGGg- -3' miRNA: 3'- -CCCa---UGCGCUCG--UCGAG---------------GCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 14574 | 0.71 | 0.471551 |
Target: 5'- aGGGgcaggccCGCGGGCGuCUCCaGCGCGGcCa -3' miRNA: 3'- -CCCau-----GCGCUCGUcGAGG-CGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 71328 | 0.7 | 0.479739 |
Target: 5'- cGGUuggaagaACGCGGGCGGCUUCGaCGgGGg- -3' miRNA: 3'- cCCA-------UGCGCUCGUCGAGGC-GCgCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 155041 | 0.7 | 0.480653 |
Target: 5'- gGGGgggACcCGGGCGGCUCgCGCGCGu-- -3' miRNA: 3'- -CCCa--UGcGCUCGUCGAG-GCGCGCcag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 15941 | 0.7 | 0.480653 |
Target: 5'- gGGGUcACGCGuagacguaGGCGGCgcguggcgccgCCGCGCGG-Cg -3' miRNA: 3'- -CCCA-UGCGC--------UCGUCGa----------GGCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 82769 | 0.7 | 0.480653 |
Target: 5'- aGGGcggACGagcucagGAGCGGCUCCuCGgGGUCg -3' miRNA: 3'- -CCCa--UGCg------CUCGUCGAGGcGCgCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 8023 | 0.7 | 0.480653 |
Target: 5'- cGGGggGCGCGGGcCGGcCUCCGC-CGG-Ca -3' miRNA: 3'- -CCCa-UGCGCUC-GUC-GAGGCGcGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 29533 | 0.7 | 0.480653 |
Target: 5'- gGGGgggACcCGGGCGGCUCgCGCGCGu-- -3' miRNA: 3'- -CCCa--UGcGCUCGUCGAG-GCGCGCcag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 38924 | 0.7 | 0.480653 |
Target: 5'- cGGGggGCGCGGGcCGGcCUCCGC-CGG-Ca -3' miRNA: 3'- -CCCa-UGCGCUC-GUC-GAGGCGcGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 68193 | 0.7 | 0.48984 |
Target: 5'- uGGGgg-GUGGGCuGggCCGUGCGGUCg -3' miRNA: 3'- -CCCaugCGCUCGuCgaGGCGCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 70859 | 0.7 | 0.48984 |
Target: 5'- aGGagACGCGGGgGGCguggCUGCGCGGg- -3' miRNA: 3'- cCCa-UGCGCUCgUCGa---GGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 74746 | 0.7 | 0.48984 |
Target: 5'- uGGaGcGCGCGcAGCuGCUCgCGCGCGGcCc -3' miRNA: 3'- -CC-CaUGCGC-UCGuCGAG-GCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 145780 | 0.7 | 0.48984 |
Target: 5'- gGGGUgccggaagcaGCGCGAGCgccucgGGCUCgGUGUGGg- -3' miRNA: 3'- -CCCA----------UGCGCUCG------UCGAGgCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 67381 | 0.7 | 0.48984 |
Target: 5'- uGGcgGCGCGGGCcuccGCcgCCGCGCGGa- -3' miRNA: 3'- cCCa-UGCGCUCGu---CGa-GGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 143932 | 0.7 | 0.499108 |
Target: 5'- cGGGgcUGCGAGgucaugauCGGCUCCauGCGCGG-Cg -3' miRNA: 3'- -CCCauGCGCUC--------GUCGAGG--CGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 13366 | 0.7 | 0.499108 |
Target: 5'- cGGGggUGCG-GCGGUcccuUCCGCGCcgggGGUCg -3' miRNA: 3'- -CCCauGCGCuCGUCG----AGGCGCG----CCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 13333 | 0.7 | 0.499108 |
Target: 5'- cGGGggUGCG-GCGGUcccuUCCGCGCcgggGGUCg -3' miRNA: 3'- -CCCauGCGCuCGUCG----AGGCGCG----CCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 93729 | 0.7 | 0.499108 |
Target: 5'- aGGGcACGCGcggcgucucguAGUAGUacacgUCgGCGCGGUCg -3' miRNA: 3'- -CCCaUGCGC-----------UCGUCG-----AGgCGCGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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