miRNA display CGI


Results 81 - 100 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 127493 0.7 0.508453
Target:  5'- gGGGgagGgGUGGGCGGgUcCCGCcgGCGGUCg -3'
miRNA:   3'- -CCCa--UgCGCUCGUCgA-GGCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 43031 0.7 0.508453
Target:  5'- gGGGUGCGgGGGCGGUggggGUGCGGg- -3'
miRNA:   3'- -CCCAUGCgCUCGUCGagg-CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 43065 0.7 0.508453
Target:  5'- gGGGUGCGgGGGCGGUggggGUGCGGg- -3'
miRNA:   3'- -CCCAUGCgCUCGUCGagg-CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 42997 0.7 0.508453
Target:  5'- gGGGUGCGgGGGCGGUggggGUGCGGg- -3'
miRNA:   3'- -CCCAUGCgCUCGUCGagg-CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 20238 0.7 0.515038
Target:  5'- uGGGccaggccucCGCGGGCAGCUCCgagaGCGCcgccucuaggacgaGGUCg -3'
miRNA:   3'- -CCCau-------GCGCUCGUCGAGG----CGCG--------------CCAG- -5'
21567 3' -60.4 NC_004812.1 + 62148 0.7 0.516926
Target:  5'- cGGcgGCGCGGGCGGcCUCCGgguucuucgggccCGCGGcCg -3'
miRNA:   3'- cCCa-UGCGCUCGUC-GAGGC-------------GCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 32291 0.7 0.51787
Target:  5'- cGGGgcCGUGAGCuGCUCCuCGgGGg- -3'
miRNA:   3'- -CCCauGCGCUCGuCGAGGcGCgCCag -5'
21567 3' -60.4 NC_004812.1 + 74356 0.7 0.51787
Target:  5'- aGGG-GCGCGGGC-GCgggCgGCGgGGUCc -3'
miRNA:   3'- -CCCaUGCGCUCGuCGa--GgCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 150695 0.7 0.51787
Target:  5'- cGGGcgGCGuCGcGGCGGCUCCGCccgccgGCGGa- -3'
miRNA:   3'- -CCCa-UGC-GC-UCGUCGAGGCG------CGCCag -5'
21567 3' -60.4 NC_004812.1 + 116391 0.7 0.51787
Target:  5'- cGGccagGCGCGGGCGGUcgccgaUCCGCuGCGGg- -3'
miRNA:   3'- cCCa---UGCGCUCGUCG------AGGCG-CGCCag -5'
21567 3' -60.4 NC_004812.1 + 147745 0.7 0.527357
Target:  5'- gGGGUcCGCGGGacgcggGGCUCC-CGCGGg- -3'
miRNA:   3'- -CCCAuGCGCUCg-----UCGAGGcGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 79557 0.7 0.527357
Target:  5'- aGGcGCGCGAGC-GCcucgCCGCGCGcGUg -3'
miRNA:   3'- cCCaUGCGCUCGuCGa---GGCGCGC-CAg -5'
21567 3' -60.4 NC_004812.1 + 18426 0.7 0.527357
Target:  5'- uGGGU-CGCGcGCGGCgggggCCGCGUccGGUg -3'
miRNA:   3'- -CCCAuGCGCuCGUCGa----GGCGCG--CCAg -5'
21567 3' -60.4 NC_004812.1 + 141760 0.7 0.527357
Target:  5'- cGGGcggcCGCgGGGCGGCgucgaacggCCGCGCGGg- -3'
miRNA:   3'- -CCCau--GCG-CUCGUCGa--------GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 59666 0.7 0.527357
Target:  5'- cGGGccgGCGCGGGCGccGCguugCCGCGCGcG-Cg -3'
miRNA:   3'- -CCCa--UGCGCUCGU--CGa---GGCGCGC-CaG- -5'
21567 3' -60.4 NC_004812.1 + 30065 0.69 0.536908
Target:  5'- aGGGgcgcGCGCGGGCGGCcgggCCcuCGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCGUCGa---GGc-GCGCCag -5'
21567 3' -60.4 NC_004812.1 + 35279 0.69 0.536908
Target:  5'- gGGGUAgGCcacgagccggguGGGCAGCacCCGCGCGaUCa -3'
miRNA:   3'- -CCCAUgCG------------CUCGUCGa-GGCGCGCcAG- -5'
21567 3' -60.4 NC_004812.1 + 155574 0.69 0.536908
Target:  5'- aGGGgcgcGCGCGGGCGGCcgggCCcuCGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCGUCGa---GGc-GCGCCag -5'
21567 3' -60.4 NC_004812.1 + 73234 0.69 0.546518
Target:  5'- cGGGUcGgGCGGGCGGC-CCGCccccagGCGGg- -3'
miRNA:   3'- -CCCA-UgCGCUCGUCGaGGCG------CGCCag -5'
21567 3' -60.4 NC_004812.1 + 95490 0.69 0.546518
Target:  5'- -uGUGCGCGGGCgccGGCgcgCCGCGgGG-Cg -3'
miRNA:   3'- ccCAUGCGCUCG---UCGa--GGCGCgCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.