Results 101 - 120 of 310 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21567 | 3' | -60.4 | NC_004812.1 | + | 73234 | 0.69 | 0.546518 |
Target: 5'- cGGGUcGgGCGGGCGGC-CCGCccccagGCGGg- -3' miRNA: 3'- -CCCA-UgCGCUCGUCGaGGCG------CGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 116201 | 0.69 | 0.546518 |
Target: 5'- cGGGcuacUACGCG-GCcuGGCUCgCGCggGCGGUCc -3' miRNA: 3'- -CCC----AUGCGCuCG--UCGAG-GCG--CGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 50276 | 0.69 | 0.546518 |
Target: 5'- cGG-GCGCGAaccgGCGGgUCUGCGCGGg- -3' miRNA: 3'- cCCaUGCGCU----CGUCgAGGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 146260 | 0.69 | 0.546518 |
Target: 5'- cGGGgcgcgACGCGgcgaGGCGGCgaaCCGCGCuGGcCa -3' miRNA: 3'- -CCCa----UGCGC----UCGUCGa--GGCGCG-CCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 128864 | 0.69 | 0.556183 |
Target: 5'- cGGgcCGCGGGCGGC-CCGCugaccGCGGcCc -3' miRNA: 3'- cCCauGCGCUCGUCGaGGCG-----CGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 38562 | 0.69 | 0.556183 |
Target: 5'- aGGUGcCGCGGGgGGaagaUCCGCG-GGUCc -3' miRNA: 3'- cCCAU-GCGCUCgUCg---AGGCGCgCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 112344 | 0.69 | 0.556183 |
Target: 5'- cGGUcgcGCGCGAccaGCGGCUaucggcCCuCGCGGUCg -3' miRNA: 3'- cCCA---UGCGCU---CGUCGA------GGcGCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 42717 | 0.69 | 0.556183 |
Target: 5'- cGGgcCGCGGGCGGUuggCCGCGgccacagaGGUCg -3' miRNA: 3'- cCCauGCGCUCGUCGa--GGCGCg-------CCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 15742 | 0.69 | 0.556183 |
Target: 5'- aGGGgccGCGgGGGCcGC-CCGCGCcGUCa -3' miRNA: 3'- -CCCa--UGCgCUCGuCGaGGCGCGcCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 74903 | 0.69 | 0.556183 |
Target: 5'- cGGGgccauCGAGCAGCUCCGCcccGUGGcCc -3' miRNA: 3'- -CCCaugc-GCUCGUCGAGGCG---CGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 136170 | 0.69 | 0.560062 |
Target: 5'- cGGGUugGCGuccgcggacguccggGGCAGggCCGCGUG-UCg -3' miRNA: 3'- -CCCAugCGC---------------UCGUCgaGGCGCGCcAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 7470 | 0.69 | 0.565896 |
Target: 5'- cGGGgaccGCGCGcccCGGCggCCGCGCGGa- -3' miRNA: 3'- -CCCa---UGCGCuc-GUCGa-GGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 19900 | 0.69 | 0.565896 |
Target: 5'- cGGGggACGCG-GCGGC-CCGCGCcGcCg -3' miRNA: 3'- -CCCa-UGCGCuCGUCGaGGCGCGcCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 25872 | 0.69 | 0.565896 |
Target: 5'- gGGGUugGCG-GCGGCcggcccUCC-CGCGG-Cg -3' miRNA: 3'- -CCCAugCGCuCGUCG------AGGcGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 16512 | 0.69 | 0.565896 |
Target: 5'- gGGGcGCGgGGGCGaugcGCUCaCGCGUGGg- -3' miRNA: 3'- -CCCaUGCgCUCGU----CGAG-GCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 132978 | 0.69 | 0.565896 |
Target: 5'- cGGGgaccGCGCGcccCGGCggCCGCGCGGa- -3' miRNA: 3'- -CCCa---UGCGCuc-GUCGa-GGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 49158 | 0.69 | 0.574674 |
Target: 5'- uGGGgaucgGCgGCGAGUccgcgacGGCcgCCGCGCGGcCg -3' miRNA: 3'- -CCCa----UG-CGCUCG-------UCGa-GGCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 23797 | 0.69 | 0.575652 |
Target: 5'- -cGUGCGCG-GCuccauGCgcgCCGCGCGGg- -3' miRNA: 3'- ccCAUGCGCuCGu----CGa--GGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 4904 | 0.69 | 0.575652 |
Target: 5'- cGGUGCGUGuGCgccAGCgaauaaacCCGCGCGGg- -3' miRNA: 3'- cCCAUGCGCuCG---UCGa-------GGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 84998 | 0.69 | 0.575652 |
Target: 5'- gGGGUccugucGCGCcgaGAGCGGCUguaCgCGCGCGGg- -3' miRNA: 3'- -CCCA------UGCG---CUCGUCGA---G-GCGCGCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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