Results 61 - 80 of 310 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21567 | 3' | -60.4 | NC_004812.1 | + | 51270 | 0.66 | 0.722743 |
Target: 5'- cGGGcccucgucGCGCGAGCauGGCgucCCG-GCGGUUa -3' miRNA: 3'- -CCCa-------UGCGCUCG--UCGa--GGCgCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 79103 | 0.66 | 0.722743 |
Target: 5'- ---aACGgGguAGCGGCgugCCGCGCGGaUCg -3' miRNA: 3'- cccaUGCgC--UCGUCGa--GGCGCGCC-AG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 122310 | 0.66 | 0.722743 |
Target: 5'- cGGGgggAgGCGGGCGGCgagucgCCuaucacgauggGCGCGGg- -3' miRNA: 3'- -CCCa--UgCGCUCGUCGa-----GG-----------CGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 122461 | 0.66 | 0.722743 |
Target: 5'- cGGGgGCGCGGGCgccccuggcgGGCgCCGgGUGGa- -3' miRNA: 3'- -CCCaUGCGCUCG----------UCGaGGCgCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 145632 | 0.66 | 0.721787 |
Target: 5'- gGGGcGCGCcAGCacGGCcaccucaucaccuUCCGCGCGGa- -3' miRNA: 3'- -CCCaUGCGcUCG--UCG-------------AGGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 19136 | 0.66 | 0.713149 |
Target: 5'- ---gGCGUGGGCGGCcagcgCCGCGgGGg- -3' miRNA: 3'- cccaUGCGCUCGUCGa----GGCGCgCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 73122 | 0.66 | 0.713149 |
Target: 5'- cGGUcACGCGGGCcgcgggauccGGCgcgCCGCcGCGGa- -3' miRNA: 3'- cCCA-UGCGCUCG----------UCGa--GGCG-CGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 4750 | 0.66 | 0.713149 |
Target: 5'- cGGGg--GCG-GCGGCUCgGCGcCGGg- -3' miRNA: 3'- -CCCaugCGCuCGUCGAGgCGC-GCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 127735 | 0.66 | 0.713149 |
Target: 5'- gGGGgccaggACuCGAGCuuggUCGCGCGGUCg -3' miRNA: 3'- -CCCa-----UGcGCUCGucgaGGCGCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 121771 | 0.66 | 0.713149 |
Target: 5'- cGGGagGCGgGGGCAGCgagggCCGCuuGGg- -3' miRNA: 3'- -CCCa-UGCgCUCGUCGa----GGCGcgCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 129251 | 0.66 | 0.713149 |
Target: 5'- cGGGccGCGCGccAGCAGCg--GCGCGG-Cg -3' miRNA: 3'- -CCCa-UGCGC--UCGUCGaggCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 155240 | 0.66 | 0.713149 |
Target: 5'- uGGUGCGCGAG-GGCgggCCgaggggggGCGCGG-Cg -3' miRNA: 3'- cCCAUGCGCUCgUCGa--GG--------CGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 130258 | 0.66 | 0.713149 |
Target: 5'- cGGGg--GCG-GCGGCUCgGCGcCGGg- -3' miRNA: 3'- -CCCaugCGCuCGUCGAGgCGC-GCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 106773 | 0.66 | 0.713149 |
Target: 5'- aGGGgcgGCGuCGGGCGGgg-CGCGCGGg- -3' miRNA: 3'- -CCCa--UGC-GCUCGUCgagGCGCGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 28202 | 0.66 | 0.713149 |
Target: 5'- cGGUGCGCGAucagaaagucGCGucGCUCCGCuugcuccuccacGCGGa- -3' miRNA: 3'- cCCAUGCGCU----------CGU--CGAGGCG------------CGCCag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 29732 | 0.66 | 0.713149 |
Target: 5'- uGGUGCGCGAG-GGCgggCCgaggggggGCGCGG-Cg -3' miRNA: 3'- cCCAUGCGCUCgUCGa--GG--------CGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 93686 | 0.66 | 0.713149 |
Target: 5'- aGGUGCGacaGGGCGcgcccGUUCCGCGCGu-- -3' miRNA: 3'- cCCAUGCg--CUCGU-----CGAGGCGCGCcag -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 3743 | 0.66 | 0.713149 |
Target: 5'- cGGGccGCGCGccAGCAGCg--GCGCGG-Cg -3' miRNA: 3'- -CCCa-UGCGC--UCGUCGaggCGCGCCaG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 61280 | 0.66 | 0.712186 |
Target: 5'- gGGGUGCuGUggaaccgcccguuGGGCGGC-CUcCGCGGUCg -3' miRNA: 3'- -CCCAUG-CG-------------CUCGUCGaGGcGCGCCAG- -5' |
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21567 | 3' | -60.4 | NC_004812.1 | + | 136816 | 0.67 | 0.703491 |
Target: 5'- aGGUGgGcCGAGCGGC-CCucuucgccccgGCGCGcGUCg -3' miRNA: 3'- cCCAUgC-GCUCGUCGaGG-----------CGCGC-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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