miRNA display CGI


Results 81 - 100 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 22906 0.67 0.703491
Target:  5'- aGGUGCGCGGG-GGCguggCCGCGCc--- -3'
miRNA:   3'- cCCAUGCGCUCgUCGa---GGCGCGccag -5'
21567 3' -60.4 NC_004812.1 + 36020 0.67 0.703491
Target:  5'- cGGUG-GCGGGCGGCgaugUCgGCcGCGGUg -3'
miRNA:   3'- cCCAUgCGCUCGUCG----AGgCG-CGCCAg -5'
21567 3' -60.4 NC_004812.1 + 48903 0.67 0.703491
Target:  5'- ---aGCGCGGGguGCUCgcgggccaCGCcGUGGUCg -3'
miRNA:   3'- cccaUGCGCUCguCGAG--------GCG-CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 150387 0.67 0.703491
Target:  5'- cGGGgcCGCGgcggcaggGGCGGCgUCCGCG-GGcCg -3'
miRNA:   3'- -CCCauGCGC--------UCGUCG-AGGCGCgCCaG- -5'
21567 3' -60.4 NC_004812.1 + 46444 0.67 0.703491
Target:  5'- uGGGcgcugGCGCuGGGCcaggcGCUCUGCGUGGa- -3'
miRNA:   3'- -CCCa----UGCG-CUCGu----CGAGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 154864 0.67 0.703491
Target:  5'- aGGGgGCGCGGGCucgGGCcgcggaggCGCGCGGg- -3'
miRNA:   3'- -CCCaUGCGCUCG---UCGag------GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 119486 0.67 0.703491
Target:  5'- cGGGgcCGCGgcggcaggGGCGGCgUCCGCG-GGcCg -3'
miRNA:   3'- -CCCauGCGC--------UCGUCG-AGGCGCgCCaG- -5'
21567 3' -60.4 NC_004812.1 + 29356 0.67 0.703491
Target:  5'- aGGGgGCGCGGGCucgGGCcgcggaggCGCGCGGg- -3'
miRNA:   3'- -CCCaUGCGCUCG---UCGag------GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 99265 0.67 0.703491
Target:  5'- aGGcACGCaccGGCGGC-CCGUGgGGUCc -3'
miRNA:   3'- cCCaUGCGc--UCGUCGaGGCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 136816 0.67 0.703491
Target:  5'- aGGUGgGcCGAGCGGC-CCucuucgccccgGCGCGcGUCg -3'
miRNA:   3'- cCCAUgC-GCUCGUCGaGG-----------CGCGC-CAG- -5'
21567 3' -60.4 NC_004812.1 + 118324 0.67 0.703491
Target:  5'- aGGGgcagaugACGCcgGAGCAGUU-UGCGCGGcCg -3'
miRNA:   3'- -CCCa------UGCG--CUCGUCGAgGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 148579 0.67 0.702522
Target:  5'- gGGGUGCcgGCGgaGGcCGGC-CCGCGCcccccggGGUCg -3'
miRNA:   3'- -CCCAUG--CGC--UC-GUCGaGGCGCG-------CCAG- -5'
21567 3' -60.4 NC_004812.1 + 117678 0.67 0.702522
Target:  5'- gGGGUGCcgGCGgaGGcCGGC-CCGCGCcccccggGGUCg -3'
miRNA:   3'- -CCCAUG--CGC--UC-GUCGaGGCGCG-------CCAG- -5'
21567 3' -60.4 NC_004812.1 + 55265 0.67 0.702522
Target:  5'- cGGuGUugGgGGGCugggccaGGCUgugggUCGCGUGGUCg -3'
miRNA:   3'- -CC-CAugCgCUCG-------UCGA-----GGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 28430 0.67 0.700582
Target:  5'- aGGUGCGUcuccgccaggcgccGAcGCAGCgCCGCGCgacccGGUCc -3'
miRNA:   3'- cCCAUGCG--------------CU-CGUCGaGGCGCG-----CCAG- -5'
21567 3' -60.4 NC_004812.1 + 92733 0.67 0.697669
Target:  5'- uGGG-GCGCGAGCuGUUCagccuguacgagugGCGCGGg- -3'
miRNA:   3'- -CCCaUGCGCUCGuCGAGg-------------CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 138036 0.67 0.697669
Target:  5'- cGGGUGCgGCGgcggcGGCGGCggagcgggcccgcgCCGCGCuGGcCg -3'
miRNA:   3'- -CCCAUG-CGC-----UCGUCGa-------------GGCGCG-CCaG- -5'
21567 3' -60.4 NC_004812.1 + 57141 0.67 0.693777
Target:  5'- uGG-GCGCGGGCgcaGGCgcCCGUcucGCGGUCa -3'
miRNA:   3'- cCCaUGCGCUCG---UCGa-GGCG---CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 581 0.67 0.693777
Target:  5'- uGGagcCGCGGGCgcGGCUCCgguaGCGCGGa- -3'
miRNA:   3'- cCCau-GCGCUCG--UCGAGG----CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 6316 0.67 0.693777
Target:  5'- cGGGcACGCGGGgGGCcCCGgGCaGGa- -3'
miRNA:   3'- -CCCaUGCGCUCgUCGaGGCgCG-CCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.