miRNA display CGI


Results 61 - 80 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 27465 0.71 0.462537
Target:  5'- ---gACGCGGGCGGCgCCGCGCGc-- -3'
miRNA:   3'- cccaUGCGCUCGUCGaGGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 27738 0.66 0.760309
Target:  5'- gGGGgcCGCGGuCAGCgggCCGCccGCGGcCc -3'
miRNA:   3'- -CCCauGCGCUcGUCGa--GGCG--CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 28202 0.66 0.713149
Target:  5'- cGGUGCGCGAucagaaagucGCGucGCUCCGCuugcuccuccacGCGGa- -3'
miRNA:   3'- cCCAUGCGCU----------CGU--CGAGGCG------------CGCCag -5'
21567 3' -60.4 NC_004812.1 + 28430 0.67 0.700582
Target:  5'- aGGUGCGUcuccgccaggcgccGAcGCAGCgCCGCGCgacccGGUCc -3'
miRNA:   3'- cCCAUGCG--------------CU-CGUCGaGGCGCG-----CCAG- -5'
21567 3' -60.4 NC_004812.1 + 29238 0.66 0.722743
Target:  5'- gGGGU-CGCgGAGgAGCgggccggggCUGCGCGGg- -3'
miRNA:   3'- -CCCAuGCG-CUCgUCGa--------GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 29356 0.67 0.703491
Target:  5'- aGGGgGCGCGGGCucgGGCcgcggaggCGCGCGGg- -3'
miRNA:   3'- -CCCaUGCGCUCG---UCGag------GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 29457 0.66 0.741704
Target:  5'- aGGGgggaCGGGCGGg-CCGCGCGGg- -3'
miRNA:   3'- -CCCaugcGCUCGUCgaGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 29533 0.7 0.480653
Target:  5'- gGGGgggACcCGGGCGGCUCgCGCGCGu-- -3'
miRNA:   3'- -CCCa--UGcGCUCGUCGAG-GCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 29732 0.66 0.713149
Target:  5'- uGGUGCGCGAG-GGCgggCCgaggggggGCGCGG-Cg -3'
miRNA:   3'- cCCAUGCGCUCgUCGa--GG--------CGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 30065 0.69 0.536908
Target:  5'- aGGGgcgcGCGCGGGCGGCcgggCCcuCGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCGUCGa---GGc-GCGCCag -5'
21567 3' -60.4 NC_004812.1 + 30171 0.68 0.614991
Target:  5'- cGGGaGCGCGcGGCgGGCUCgGCGCGcG-Cg -3'
miRNA:   3'- -CCCaUGCGC-UCG-UCGAGgCGCGC-CaG- -5'
21567 3' -60.4 NC_004812.1 + 30229 0.71 0.466132
Target:  5'- gGGGgcgcGCGCGGGCggGGCUCgcggccgcggggacaCGCGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCG--UCGAG---------------GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 30480 0.67 0.684014
Target:  5'- uGGGUcguCGCGcAGUAGCggCGCucGCGGUUg -3'
miRNA:   3'- -CCCAu--GCGC-UCGUCGagGCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 30767 0.67 0.654519
Target:  5'- cGGGgcCGCGGGCgagccGGCcCCGCcuGCGGg- -3'
miRNA:   3'- -CCCauGCGCUCG-----UCGaGGCG--CGCCag -5'
21567 3' -60.4 NC_004812.1 + 31482 0.67 0.693777
Target:  5'- uGGagcCGCGGGCgcGGCUCCgguaGCGCGGa- -3'
miRNA:   3'- cCCau-GCGCUCG--UCGAGG----CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 31600 0.67 0.664378
Target:  5'- cGGGUcCG-GAGCuccgucggcgucGGCgCCgGCGCGGUCg -3'
miRNA:   3'- -CCCAuGCgCUCG------------UCGaGG-CGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 31915 0.66 0.722743
Target:  5'- gGGGUcgcccccauugACGUcAGCGGCUacaaCCcCGCGGUCu -3'
miRNA:   3'- -CCCA-----------UGCGcUCGUCGA----GGcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 32216 0.75 0.253644
Target:  5'- cGGUcCGCGGGCGG-UCCGCggGCGGUCc -3'
miRNA:   3'- cCCAuGCGCUCGUCgAGGCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 32291 0.7 0.51787
Target:  5'- cGGGgcCGUGAGCuGCUCCuCGgGGg- -3'
miRNA:   3'- -CCCauGCGCUCGuCGAGGcGCgCCag -5'
21567 3' -60.4 NC_004812.1 + 35279 0.69 0.536908
Target:  5'- gGGGUAgGCcacgagccggguGGGCAGCacCCGCGCGaUCa -3'
miRNA:   3'- -CCCAUgCG------------CUCGUCGa-GGCGCGCcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.