miRNA display CGI


Results 81 - 100 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 35805 0.69 0.575652
Target:  5'- cGGUGCGUGuGCgccAGCgaauaaacCCGCGCGGg- -3'
miRNA:   3'- cCCAUGCGCuCG---UCGa-------GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 35841 0.69 0.575652
Target:  5'- cGGUACuuGcGCAGCagCGCGgGGUCg -3'
miRNA:   3'- cCCAUGcgCuCGUCGagGCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 35909 0.66 0.760309
Target:  5'- gGGGUccuCGaCGAGCucgcGCUCCcGgGCGGcCg -3'
miRNA:   3'- -CCCAu--GC-GCUCGu---CGAGG-CgCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 36020 0.67 0.703491
Target:  5'- cGGUG-GCGGGCGGCgaugUCgGCcGCGGUg -3'
miRNA:   3'- cCCAUgCGCUCGUCG----AGgCG-CGCCAg -5'
21567 3' -60.4 NC_004812.1 + 36169 0.75 0.259568
Target:  5'- gGGGUGCGCGGGgucGCUCUGggaGUGGUCg -3'
miRNA:   3'- -CCCAUGCGCUCgu-CGAGGCg--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 36719 0.66 0.751055
Target:  5'- cGGG-GCGCG-GCgGGCUCUGCG-GGcCg -3'
miRNA:   3'- -CCCaUGCGCuCG-UCGAGGCGCgCCaG- -5'
21567 3' -60.4 NC_004812.1 + 36784 0.68 0.605122
Target:  5'- cGGGggGCGCGGGCgcgggcucaggGGCcgCCGgGCGG-Ca -3'
miRNA:   3'- -CCCa-UGCGCUCG-----------UCGa-GGCgCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 36923 0.74 0.311064
Target:  5'- aGGGgACGCGGGCAGCgaCUGCGCGc-- -3'
miRNA:   3'- -CCCaUGCGCUCGUCGa-GGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 37181 0.67 0.693777
Target:  5'- -uGUGCGCGAggaccuGCAGCgUCagcaGCGCGGg- -3'
miRNA:   3'- ccCAUGCGCU------CGUCG-AGg---CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 37217 0.67 0.693777
Target:  5'- cGGGcACGCGGGgGGCcCCGgGCaGGa- -3'
miRNA:   3'- -CCCaUGCGCUCgUCGaGGCgCG-CCag -5'
21567 3' -60.4 NC_004812.1 + 37278 0.77 0.195614
Target:  5'- aGGG-ACGCGGGCAGCguUCCG-GgGGUCa -3'
miRNA:   3'- -CCCaUGCGCUCGUCG--AGGCgCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 37624 0.68 0.634759
Target:  5'- cGGUGCGCGucCAGCUgCuCGCGG-Cg -3'
miRNA:   3'- cCCAUGCGCucGUCGAgGcGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 37731 0.72 0.402151
Target:  5'- uGGGUGgG-GGGCGGCggcCCuCGCGGUCg -3'
miRNA:   3'- -CCCAUgCgCUCGUCGa--GGcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 38562 0.69 0.556183
Target:  5'- aGGUGcCGCGGGgGGaagaUCCGCG-GGUCc -3'
miRNA:   3'- cCCAU-GCGCUCgUCg---AGGCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 38587 0.68 0.628827
Target:  5'- gGGGUGgGCGGGC-GCgggggucgcgccgagUCCGCgGCGGg- -3'
miRNA:   3'- -CCCAUgCGCUCGuCG---------------AGGCG-CGCCag -5'
21567 3' -60.4 NC_004812.1 + 38924 0.7 0.480653
Target:  5'- cGGGggGCGCGGGcCGGcCUCCGC-CGG-Ca -3'
miRNA:   3'- -CCCa-UGCGCUC-GUC-GAGGCGcGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 39852 0.68 0.634759
Target:  5'- cGGUGCgGgGGGCcgggGGCUCCgccauggcGCGUGGUCc -3'
miRNA:   3'- cCCAUG-CgCUCG----UCGAGG--------CGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 40083 0.66 0.751055
Target:  5'- cGGGcg-GCGGGCGGCgggcggCCggGCGCGcGUCc -3'
miRNA:   3'- -CCCaugCGCUCGUCGa-----GG--CGCGC-CAG- -5'
21567 3' -60.4 NC_004812.1 + 40202 0.74 0.325095
Target:  5'- cGGgcCGCGGG-GGCUCUGCGCGGg- -3'
miRNA:   3'- cCCauGCGCUCgUCGAGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 41543 0.68 0.644643
Target:  5'- -cGUGCGC-AGCgAGCUCCGCcggcGCGGg- -3'
miRNA:   3'- ccCAUGCGcUCG-UCGAGGCG----CGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.