miRNA display CGI


Results 61 - 80 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 128864 0.69 0.556183
Target:  5'- cGGgcCGCGGGCGGC-CCGCugaccGCGGcCc -3'
miRNA:   3'- cCCauGCGCUCGUCGaGGCG-----CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 128764 0.66 0.760309
Target:  5'- cGGGcucGgGCGGGCcGCagCGCGCGG-Cg -3'
miRNA:   3'- -CCCa--UgCGCUCGuCGagGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 128241 0.67 0.684014
Target:  5'- ---gGCGCGGcGCAGgUCgCGCGCGG-Cg -3'
miRNA:   3'- cccaUGCGCU-CGUCgAG-GCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 128041 0.71 0.453615
Target:  5'- ---aGCGCGGGCAGCaCgGCGCGG-Cg -3'
miRNA:   3'- cccaUGCGCUCGUCGaGgCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 127871 0.67 0.693777
Target:  5'- cGGGcccgGCGCGcGCGGCgu--CGCGGUCc -3'
miRNA:   3'- -CCCa---UGCGCuCGUCGaggcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 127735 0.66 0.713149
Target:  5'- gGGGgccaggACuCGAGCuuggUCGCGCGGUCg -3'
miRNA:   3'- -CCCa-----UGcGCUCGucgaGGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 127493 0.7 0.508453
Target:  5'- gGGGgagGgGUGGGCGGgUcCCGCcgGCGGUCg -3'
miRNA:   3'- -CCCa--UgCGCUCGUCgA-GGCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 126807 0.66 0.744519
Target:  5'- -cGUACGCGAGCcgucuguuugccaccAGCUgcccgaccaucgcCCGUGUGGUg -3'
miRNA:   3'- ccCAUGCGCUCG---------------UCGA-------------GGCGCGCCAg -5'
21567 3' -60.4 NC_004812.1 + 125562 0.68 0.634759
Target:  5'- cGGGgggGCGCGuuugGGCgGGCUCCcGgGCGGg- -3'
miRNA:   3'- -CCCa--UGCGC----UCG-UCGAGG-CgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 125281 0.68 0.614991
Target:  5'- cGGGcgcGCGCGAG-AGCgCCGCGCGcGg- -3'
miRNA:   3'- -CCCa--UGCGCUCgUCGaGGCGCGC-Cag -5'
21567 3' -60.4 NC_004812.1 + 125190 0.68 0.605122
Target:  5'- cGGGcGCGCGGGCccGCcccggCCGCgGCGGcCg -3'
miRNA:   3'- -CCCaUGCGCUCGu-CGa----GGCG-CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 125117 0.66 0.732264
Target:  5'- cGGGUccGCGCuaccgGAGCcgcgcccgcGGCUCCaCGCGGcCg -3'
miRNA:   3'- -CCCA--UGCG-----CUCG---------UCGAGGcGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 124684 0.69 0.575652
Target:  5'- cGGGga-GCGAGCGGC----CGCGGUCg -3'
miRNA:   3'- -CCCaugCGCUCGUCGaggcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 124408 0.68 0.641679
Target:  5'- uGGUGCaGCGGGCcgugcuggacguGGCccggaggcacccggUCCGCGCGGg- -3'
miRNA:   3'- cCCAUG-CGCUCG------------UCG--------------AGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 124176 0.73 0.339591
Target:  5'- cGGUACGUgGGGCGGCUggGCGCGGcCg -3'
miRNA:   3'- cCCAUGCG-CUCGUCGAggCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 123819 0.66 0.732264
Target:  5'- gGGGUGcCGCGGGCggGGC-CCGgGCGc-- -3'
miRNA:   3'- -CCCAU-GCGCUCG--UCGaGGCgCGCcag -5'
21567 3' -60.4 NC_004812.1 + 123638 0.66 0.732264
Target:  5'- aGG-ACGCG-GCGGCggUCCGgacgGCGGUCc -3'
miRNA:   3'- cCCaUGCGCuCGUCG--AGGCg---CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 122461 0.66 0.722743
Target:  5'- cGGGgGCGCGGGCgccccuggcgGGCgCCGgGUGGa- -3'
miRNA:   3'- -CCCaUGCGCUCG----------UCGaGGCgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 122310 0.66 0.722743
Target:  5'- cGGGgggAgGCGGGCGGCgagucgCCuaucacgauggGCGCGGg- -3'
miRNA:   3'- -CCCa--UgCGCUCGUCGa-----GG-----------CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 122225 0.75 0.284396
Target:  5'- gGGGgcggGCGCGGGgGGCUCgGCgGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCgUCGAGgCG-CGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.