miRNA display CGI


Results 81 - 100 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 43065 0.7 0.508453
Target:  5'- gGGGUGCGgGGGCGGUggggGUGCGGg- -3'
miRNA:   3'- -CCCAUGCgCUCGUCGagg-CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 127493 0.7 0.508453
Target:  5'- gGGGgagGgGUGGGCGGgUcCCGCcgGCGGUCg -3'
miRNA:   3'- -CCCa--UgCGCUCGUCgA-GGCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 20238 0.7 0.515038
Target:  5'- uGGGccaggccucCGCGGGCAGCUCCgagaGCGCcgccucuaggacgaGGUCg -3'
miRNA:   3'- -CCCau-------GCGCUCGUCGAGG----CGCG--------------CCAG- -5'
21567 3' -60.4 NC_004812.1 + 62148 0.7 0.516926
Target:  5'- cGGcgGCGCGGGCGGcCUCCGgguucuucgggccCGCGGcCg -3'
miRNA:   3'- cCCa-UGCGCUCGUC-GAGGC-------------GCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 32291 0.7 0.51787
Target:  5'- cGGGgcCGUGAGCuGCUCCuCGgGGg- -3'
miRNA:   3'- -CCCauGCGCUCGuCGAGGcGCgCCag -5'
21567 3' -60.4 NC_004812.1 + 74356 0.7 0.51787
Target:  5'- aGGG-GCGCGGGC-GCgggCgGCGgGGUCc -3'
miRNA:   3'- -CCCaUGCGCUCGuCGa--GgCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 150695 0.7 0.51787
Target:  5'- cGGGcgGCGuCGcGGCGGCUCCGCccgccgGCGGa- -3'
miRNA:   3'- -CCCa-UGC-GC-UCGUCGAGGCG------CGCCag -5'
21567 3' -60.4 NC_004812.1 + 74746 0.7 0.48984
Target:  5'- uGGaGcGCGCGcAGCuGCUCgCGCGCGGcCc -3'
miRNA:   3'- -CC-CaUGCGC-UCGuCGAG-GCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 70859 0.7 0.48984
Target:  5'- aGGagACGCGGGgGGCguggCUGCGCGGg- -3'
miRNA:   3'- cCCa-UGCGCUCgUCGa---GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 8023 0.7 0.480653
Target:  5'- cGGGggGCGCGGGcCGGcCUCCGC-CGG-Ca -3'
miRNA:   3'- -CCCa-UGCGCUC-GUC-GAGGCGcGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 152973 0.71 0.462537
Target:  5'- ---gACGCGGGCGGCgCCGCGCGc-- -3'
miRNA:   3'- cccaUGCGCUCGUCGaGGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 101998 0.71 0.462537
Target:  5'- gGGGUcGCGCGAcucGCGGCgccgCCGCGagGGUg -3'
miRNA:   3'- -CCCA-UGCGCU---CGUCGa---GGCGCg-CCAg -5'
21567 3' -60.4 NC_004812.1 + 103635 0.71 0.462537
Target:  5'- cGGUAgcucuccuCGCGGGCgcggAGCUCgGCGCGGa- -3'
miRNA:   3'- cCCAU--------GCGCUCG----UCGAGgCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 151836 0.71 0.462537
Target:  5'- cGGGUACGCcAGCGGCgagCCGUGgccCGG-Cg -3'
miRNA:   3'- -CCCAUGCGcUCGUCGa--GGCGC---GCCaG- -5'
21567 3' -60.4 NC_004812.1 + 155737 0.71 0.466132
Target:  5'- gGGGgcgcGCGCGGGCggGGCUCgcggccgcggggacaCGCGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCG--UCGAG---------------GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 14574 0.71 0.471551
Target:  5'- aGGGgcaggccCGCGGGCGuCUCCaGCGCGGcCa -3'
miRNA:   3'- -CCCau-----GCGCUCGUcGAGG-CGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 71328 0.7 0.479739
Target:  5'- cGGUuggaagaACGCGGGCGGCUUCGaCGgGGg- -3'
miRNA:   3'- cCCA-------UGCGCUCGUCGAGGC-GCgCCag -5'
21567 3' -60.4 NC_004812.1 + 82769 0.7 0.480653
Target:  5'- aGGGcggACGagcucagGAGCGGCUCCuCGgGGUCg -3'
miRNA:   3'- -CCCa--UGCg------CUCGUCGAGGcGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 155041 0.7 0.480653
Target:  5'- gGGGgggACcCGGGCGGCUCgCGCGCGu-- -3'
miRNA:   3'- -CCCa--UGcGCUCGUCGAG-GCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 147745 0.7 0.527357
Target:  5'- gGGGUcCGCGGGacgcggGGCUCC-CGCGGg- -3'
miRNA:   3'- -CCCAuGCGCUCg-----UCGAGGcGCGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.