miRNA display CGI


Results 21 - 40 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 61033 0.71 0.444787
Target:  5'- ---cGCGCGGGC-GCggCCGUGCGGUUa -3'
miRNA:   3'- cccaUGCGCUCGuCGa-GGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 37731 0.72 0.402151
Target:  5'- uGGGUGgG-GGGCGGCggcCCuCGCGGUCg -3'
miRNA:   3'- -CCCAUgCgCUCGUCGa--GGcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 56123 0.74 0.325095
Target:  5'- cGGUACGCcuGCGcGCUCCGgGCGGcCg -3'
miRNA:   3'- cCCAUGCGcuCGU-CGAGGCgCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 43864 0.76 0.225677
Target:  5'- cGG-GCGCG-GCGGCgccgCCGCGCGGUUc -3'
miRNA:   3'- cCCaUGCGCuCGUCGa---GGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 68193 0.7 0.48984
Target:  5'- uGGGgg-GUGGGCuGggCCGUGCGGUCg -3'
miRNA:   3'- -CCCaugCGCUCGuCgaGGCGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 27465 0.71 0.462537
Target:  5'- ---gACGCGGGCGGCgCCGCGCGc-- -3'
miRNA:   3'- cccaUGCGCUCGUCGaGGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 51608 0.72 0.385837
Target:  5'- cGGG-GCGCGAGgGGCgCCGCgGCGGcCc -3'
miRNA:   3'- -CCCaUGCGCUCgUCGaGGCG-CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 37278 0.77 0.195614
Target:  5'- aGGG-ACGCGGGCAGCguUCCG-GgGGUCa -3'
miRNA:   3'- -CCCaUGCGCUCGUCG--AGGCgCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 107468 0.71 0.453615
Target:  5'- -cGUugGCGAGCAGCcgCUggaggaccacgaGCGCGGUg -3'
miRNA:   3'- ccCAugCGCUCGUCGa-GG------------CGCGCCAg -5'
21567 3' -60.4 NC_004812.1 + 48739 0.78 0.161016
Target:  5'- uGGUGCGCGuGGCGGCUCCGCccucggagGCGGa- -3'
miRNA:   3'- cCCAUGCGC-UCGUCGAGGCG--------CGCCag -5'
21567 3' -60.4 NC_004812.1 + 148525 0.72 0.393939
Target:  5'- gGGGgcgGCGCGGGCcgccgGGCgCgGCGgGGUCg -3'
miRNA:   3'- -CCCa--UGCGCUCG-----UCGaGgCGCgCCAG- -5'
21567 3' -60.4 NC_004812.1 + 94334 0.71 0.444787
Target:  5'- aGGUGUGCGGcGCGGC-CUGCGCGGg- -3'
miRNA:   3'- cCCAUGCGCU-CGUCGaGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 124176 0.73 0.339591
Target:  5'- cGGUACGUgGGGCGGCUggGCGCGGcCg -3'
miRNA:   3'- cCCAUGCG-CUCGUCGAggCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 58288 0.73 0.332285
Target:  5'- cGGcGUACGCGAGcCAGCacCCGCGCGc-- -3'
miRNA:   3'- -CC-CAUGCGCUC-GUCGa-GGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 3905 0.74 0.297498
Target:  5'- cGGGcgcggcgGCGCG-GCGGCggggCCGCGCGG-Cg -3'
miRNA:   3'- -CCCa------UGCGCuCGUCGa---GGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 146407 0.76 0.236537
Target:  5'- -cGUGCGCGGcCAGCUCCGCGuCGGg- -3'
miRNA:   3'- ccCAUGCGCUcGUCGAGGCGC-GCCag -5'
21567 3' -60.4 NC_004812.1 + 13366 0.7 0.499108
Target:  5'- cGGGggUGCG-GCGGUcccuUCCGCGCcgggGGUCg -3'
miRNA:   3'- -CCCauGCGCuCGUCG----AGGCGCG----CCAG- -5'
21567 3' -60.4 NC_004812.1 + 145780 0.7 0.48984
Target:  5'- gGGGUgccggaagcaGCGCGAGCgccucgGGCUCgGUGUGGg- -3'
miRNA:   3'- -CCCA----------UGCGCUCG------UCGAGgCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 15941 0.7 0.480653
Target:  5'- gGGGUcACGCGuagacguaGGCGGCgcguggcgccgCCGCGCGG-Cg -3'
miRNA:   3'- -CCCA-UGCGC--------UCGUCGa----------GGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 25186 0.71 0.462537
Target:  5'- cGGGgcgGCGuCGcGGCGGCUCCGCccgccgGCGGa- -3'
miRNA:   3'- -CCCa--UGC-GC-UCGUCGAGGCG------CGCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.