miRNA display CGI


Results 61 - 80 of 310 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 145780 0.7 0.48984
Target:  5'- gGGGUgccggaagcaGCGCGAGCgccucgGGCUCgGUGUGGg- -3'
miRNA:   3'- -CCCA----------UGCGCUCG------UCGAGgCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 116391 0.7 0.51787
Target:  5'- cGGccagGCGCGGGCGGUcgccgaUCCGCuGCGGg- -3'
miRNA:   3'- cCCa---UGCGCUCGUCG------AGGCG-CGCCag -5'
21567 3' -60.4 NC_004812.1 + 32216 0.75 0.253644
Target:  5'- cGGUcCGCGGGCGG-UCCGCggGCGGUCc -3'
miRNA:   3'- cCCAuGCGCUCGUCgAGGCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 36923 0.74 0.311064
Target:  5'- aGGGgACGCGGGCAGCgaCUGCGCGc-- -3'
miRNA:   3'- -CCCaUGCGCUCGUCGa-GGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 105256 0.73 0.338855
Target:  5'- uGGG-GCGCGGGCGGCUCCccggcgacuccgaGgGCGGg- -3'
miRNA:   3'- -CCCaUGCGCUCGUCGAGG-------------CgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 134106 0.73 0.347013
Target:  5'- cGGUGCGUGAcGguGgUCCGCGCgccgauggGGUCg -3'
miRNA:   3'- cCCAUGCGCU-CguCgAGGCGCG--------CCAG- -5'
21567 3' -60.4 NC_004812.1 + 46902 0.72 0.402151
Target:  5'- cGGGgcggGCGCG-GCGGCcgCCGCcGCGG-Cg -3'
miRNA:   3'- -CCCa---UGCGCuCGUCGa-GGCG-CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 94334 0.71 0.444787
Target:  5'- aGGUGUGCGGcGCGGC-CUGCGCGGg- -3'
miRNA:   3'- cCCAUGCGCU-CGUCGaGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 27465 0.71 0.462537
Target:  5'- ---gACGCGGGCGGCgCCGCGCGc-- -3'
miRNA:   3'- cccaUGCGCUCGUCGaGGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 30229 0.71 0.466132
Target:  5'- gGGGgcgcGCGCGGGCggGGCUCgcggccgcggggacaCGCGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCG--UCGAG---------------GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 141377 0.67 0.653532
Target:  5'- cGGGUccgcccuGCGCGaAGCAGUcggccaggCCGCGCGcaaaGUCc -3'
miRNA:   3'- -CCCA-------UGCGC-UCGUCGa-------GGCGCGC----CAG- -5'
21567 3' -60.4 NC_004812.1 + 124408 0.68 0.641679
Target:  5'- uGGUGCaGCGGGCcgugcuggacguGGCccggaggcacccggUCCGCGCGGg- -3'
miRNA:   3'- cCCAUG-CGCUCG------------UCG--------------AGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 59666 0.7 0.527357
Target:  5'- cGGGccgGCGCGGGCGccGCguugCCGCGCGcG-Cg -3'
miRNA:   3'- -CCCa--UGCGCUCGU--CGa---GGCGCGC-CaG- -5'
21567 3' -60.4 NC_004812.1 + 50276 0.69 0.546518
Target:  5'- cGG-GCGCGAaccgGCGGgUCUGCGCGGg- -3'
miRNA:   3'- cCCaUGCGCU----CGUCgAGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 7470 0.69 0.565896
Target:  5'- cGGGgaccGCGCGcccCGGCggCCGCGCGGa- -3'
miRNA:   3'- -CCCa---UGCGCuc-GUCGa-GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 124684 0.69 0.575652
Target:  5'- cGGGga-GCGAGCGGC----CGCGGUCg -3'
miRNA:   3'- -CCCaugCGCUCGUCGaggcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 57517 0.69 0.585446
Target:  5'- uGGGaGCGCGgaaAGCggGGCUCCGCcacguGCGGg- -3'
miRNA:   3'- -CCCaUGCGC---UCG--UCGAGGCG-----CGCCag -5'
21567 3' -60.4 NC_004812.1 + 43154 0.68 0.595271
Target:  5'- aGGGUcCGCGAcaccGCGGCggcCCGgGCguuGGUCa -3'
miRNA:   3'- -CCCAuGCGCU----CGUCGa--GGCgCG---CCAG- -5'
21567 3' -60.4 NC_004812.1 + 30171 0.68 0.614991
Target:  5'- cGGGaGCGCGcGGCgGGCUCgGCGCGcG-Cg -3'
miRNA:   3'- -CCCaUGCGC-UCG-UCGAGgCGCGC-CaG- -5'
21567 3' -60.4 NC_004812.1 + 59282 0.68 0.63377
Target:  5'- aGGGU-CGCGGGCGcGCggcacCCGCccgccgcgagcucGUGGUCg -3'
miRNA:   3'- -CCCAuGCGCUCGU-CGa----GGCG-------------CGCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.