miRNA display CGI


Results 81 - 100 of 310 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21567 3' -60.4 NC_004812.1 + 18821 0.69 0.546518
Target:  5'- cGGGUguGCgGCGGGCGGCgguugcgcgCCGCcCGGUg -3'
miRNA:   3'- -CCCA--UG-CGCUCGUCGa--------GGCGcGCCAg -5'
21567 3' -60.4 NC_004812.1 + 112344 0.69 0.556183
Target:  5'- cGGUcgcGCGCGAccaGCGGCUaucggcCCuCGCGGUCg -3'
miRNA:   3'- cCCA---UGCGCU---CGUCGA------GGcGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 16512 0.69 0.565896
Target:  5'- gGGGcGCGgGGGCGaugcGCUCaCGCGUGGg- -3'
miRNA:   3'- -CCCaUGCgCUCGU----CGAG-GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 35805 0.69 0.575652
Target:  5'- cGGUGCGUGuGCgccAGCgaauaaacCCGCGCGGg- -3'
miRNA:   3'- cCCAUGCGCuCG---UCGa-------GGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 139873 0.68 0.594287
Target:  5'- gGGGcGCccugcgucgacggGCGAGCGGgaCCGgcccCGCGGUCg -3'
miRNA:   3'- -CCCaUG-------------CGCUCGUCgaGGC----GCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 30171 0.68 0.614991
Target:  5'- cGGGaGCGCGcGGCgGGCUCgGCGCGcG-Cg -3'
miRNA:   3'- -CCCaUGCGC-UCG-UCGAGgCGCGC-CaG- -5'
21567 3' -60.4 NC_004812.1 + 59282 0.68 0.63377
Target:  5'- aGGGU-CGCGGGCGcGCggcacCCGCccgccgcgagcucGUGGUCg -3'
miRNA:   3'- -CCCAuGCGCUCGU-CGa----GGCG-------------CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 30229 0.71 0.466132
Target:  5'- gGGGgcgcGCGCGGGCggGGCUCgcggccgcggggacaCGCGCGGg- -3'
miRNA:   3'- -CCCa---UGCGCUCG--UCGAG---------------GCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 27465 0.71 0.462537
Target:  5'- ---gACGCGGGCGGCgCCGCGCGc-- -3'
miRNA:   3'- cccaUGCGCUCGUCGaGGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 94334 0.71 0.444787
Target:  5'- aGGUGUGCGGcGCGGC-CUGCGCGGg- -3'
miRNA:   3'- cCCAUGCGCU-CGUCGaGGCGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 31600 0.67 0.664378
Target:  5'- cGGGUcCG-GAGCuccgucggcgucGGCgCCgGCGCGGUCg -3'
miRNA:   3'- -CCCAuGCgCUCG------------UCGaGG-CGCGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 116467 0.67 0.674212
Target:  5'- uGGGU-CGCG-GCGGCggauagcuucgCCGCgGCGGcCa -3'
miRNA:   3'- -CCCAuGCGCuCGUCGa----------GGCG-CGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 31482 0.67 0.693777
Target:  5'- uGGagcCGCGGGCgcGGCUCCgguaGCGCGGa- -3'
miRNA:   3'- cCCau-GCGCUCG--UCGAGG----CGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 67201 0.67 0.693777
Target:  5'- gGGGUGacCGCG-GCGGCggcgCC-CGCGGg- -3'
miRNA:   3'- -CCCAU--GCGCuCGUCGa---GGcGCGCCag -5'
21567 3' -60.4 NC_004812.1 + 118324 0.67 0.703491
Target:  5'- aGGGgcagaugACGCcgGAGCAGUU-UGCGCGGcCg -3'
miRNA:   3'- -CCCa------UGCG--CUCGUCGAgGCGCGCCaG- -5'
21567 3' -60.4 NC_004812.1 + 32216 0.75 0.253644
Target:  5'- cGGUcCGCGGGCGG-UCCGCggGCGGUCc -3'
miRNA:   3'- cCCAuGCGCUCGUCgAGGCG--CGCCAG- -5'
21567 3' -60.4 NC_004812.1 + 36923 0.74 0.311064
Target:  5'- aGGGgACGCGGGCAGCgaCUGCGCGc-- -3'
miRNA:   3'- -CCCaUGCGCUCGUCGa-GGCGCGCcag -5'
21567 3' -60.4 NC_004812.1 + 105256 0.73 0.338855
Target:  5'- uGGG-GCGCGGGCGGCUCCccggcgacuccgaGgGCGGg- -3'
miRNA:   3'- -CCCaUGCGCUCGUCGAGG-------------CgCGCCag -5'
21567 3' -60.4 NC_004812.1 + 134106 0.73 0.347013
Target:  5'- cGGUGCGUGAcGguGgUCCGCGCgccgauggGGUCg -3'
miRNA:   3'- cCCAUGCGCU-CguCgAGGCGCG--------CCAG- -5'
21567 3' -60.4 NC_004812.1 + 46902 0.72 0.402151
Target:  5'- cGGGgcggGCGCG-GCGGCcgCCGCcGCGG-Cg -3'
miRNA:   3'- -CCCa---UGCGCuCGUCGa-GGCG-CGCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.